Approximate geodesic distances reveal biologically relevant structures in microarray data. - Jens Nilsson 002; Thoas Fioretos; Mattias Höglund; Magnus Fontes (Bioinform., 2004)

Nonlinear Dimensionality Reduction Using Circuit Models. - Fredrik Andersson; Jens Nilsson 002 (SCIA, 2005)

Regression on manifolds using kernel dimension reduction. - Jens Nilsson 002; Fei Sha; Michael I. Jordan (ICML, 2007)

A circuit framework for robust manifold learning. - Jens Nilsson 002; Fredrik Andersson (Neurocomputing, 2007)

Manifold Learning in Computational Biology. - Jens Nilsson 002 (2008)