Root nodule specific gene regulation: analysis of the soybean nodulin N23 gene promoter in heterologous symbiotic systems. - Jan-Elo JØrgensen; Jens Stougaard; Anne Marcker; Kjeld A. Marcker (Nucleic Acids Res., 1988)

PriFi: using a multiple alignment of related sequences to find primers for amplification of homologs. - Jakob Fredslund; Leif Schauser; Lene H. Madsen; Niels Sandal; Jens Stougaard (Nucleic Acids Res., 2005)

GeMprospector - online design of cross-species genetic marker candidates in legumes and grasses. - Jakob Fredslund; Lene H. Madsen; Birgit K. Hougaard; Niels Sandal; Jens Stougaard; David Bertioli; Leif Schauser (Nucleic Acids Res., 2006)

shortran: a pipeline for small RNA-seq data analysis. - Vikas Gupta; Katharina Markmann; Christian N. S. Pedersen; Jens Stougaard; Stig U. Andersen (Bioinform., 2012)