Analyzing the dynamics of hand tremor time series. - C. Gantert; Josef Honerkamp; Jens Timmer (Biol. Cybern., 1992)

Characteristics of hand tremor time series. - Jens Timmer; C. Gantert; Günther Deuschl; Josef Honerkamp (Biol. Cybern., 1993)

Modeling Volatility Using State Space Models. - Jens Timmer; Andreas S. Weigend (Int. J. Neural Syst., 1997)

Detecting multimodality in saccadic reaction time distributions in gap and overlap tasks. - Stefan Gezeck; Jens Timmer (Biol. Cybern., 1998)

Cross-spectral analysis of physiological tremor and muscle activity. - Jens Timmer; M. Lauk; W. Pfleger; Günther Deuschl (Biol. Cybern., 1998)

Early detection of upper airway obstructions by analysis of acoustical respiratory input impedance. - S. Reisch; Holger Steltner; Jens Timmer; Christine Renotte; Josef Guttmann (Biol. Cybern., 1999)

Estimating rate constants in hidden Markov models by the EM algorithm. - Steffen Michalek; Jens Timmer (IEEE Trans. Signal Process., 1999)

Analysis of Nonlinear Differential Equations: Parameter Estimation and Model Selection. - Werner Horbelt; Thorsten Müller 001; Jens Timmer; Werner Melzer; Karl Winkler (ISMDA, 2000)

Classification of Electro-encephalographic Spatial Patterns. - Thorsten Müller 001; T. Ball; R. Kristeva-Feige; Thomas Mergner; Jens Timmer (ISMDA, 2000)

Detection and Classification of Sleep-Disordered Breathing Using Acoustic Respiratory Input Impedance and Nasal Pressure. - Holger Steltner; Richard Staats; Michael Vogel; Christian Virchow; Heinrich Matthys; Josef Guttmann; Jens Timmer (ISMDA, 2000)

Cross-spectral Analysis of tremor Time Series. - Jens Timmer; Michael Lauk; S. Häußler; V. Radt; B. Köster; B. Hellwig; B. Guschlbauer; C. H. Lücking; M. Eichler; Günther Deuschl (Int. J. Bifurc. Chaos, 2000)

A new approximate likelihood estimator for ARMA-filtered hidden Markov models. - Steffen Michalek; Mirko Wagner; Jens Timmer (IEEE Trans. Signal Process., 2000)

Normalization of DNA-Microarray Data by Nonlinear Correlation Maximization. - Daniel Faller; Henning U. Voss; Jens Timmer; Uwe Hobohm (J. Comput. Biol., 2003)

Simulation Methods for Optimal Experimental Design in Systems Biology. - Daniel Faller; Ursula Klingmüller; Jens Timmer (Simul., 2003)

Identification of Rate Constants and nonobservable Absorption Spectra in Nonlinear Biochemical Reaction Dynamics. - Douglas Maraun; Werner Horbelt; Henning W. Rust; Jens Timmer; H. P. Happersberger; F. Drepper (Int. J. Bifurc. Chaos, 2004)

Parameter Identification Techniques for Partial Differential Equations. - T. G. Müller; Jens Timmer (Int. J. Bifurc. Chaos, 2004)

Surrogate-Based Hypothesis Test without Surrogates. - Marco Thiel; M. Carmen Romano; Udo Schwarz; Jürgen Kurths; Jens Timmer (Int. J. Bifurc. Chaos, 2004)

Modeling the Nonlinear Dynamics of Cellular Signal Transduction. - Jens Timmer; T. G. Müller; I. Swameye; O. Sandra; Ursula Klingmüller (Int. J. Bifurc. Chaos, 2004)

Nonlinear Dynamical System Identification from Uncertain and Indirect Measurements. - Henning U. Voss; Jens Timmer; Jürgen Kurths (Int. J. Bifurc. Chaos, 2004)

An Open Source Protein Gel Documentation System for Proteome Analyses. - Daniel Faller; Thomas Reinheckel; Daniel Wenzler; Sascha Hagemann; Ke Xiao; Josef Honerkamp; Christoph Peters; Thomas Dandekar; Jens Timmer (J. Chem. Inf. Model., 2004)

Comparison of linear signal processing techniques to infer directed interactions in multivariate neural systems. - Matthias Winterhalder; Björn Schelter; Wolfram Hesse; Karin Schwab; Lutz Leistritz; Daniel Klan; Reinhard Bauer; Jens Timmer; Herbert Witte (Signal Process., 2005)

Bistability and Self-oscillations in Cell Cycle Control. - Valko Petrov; Martin Peifer; Jens Timmer (Int. J. Bifurc. Chaos, 2006)

Data-based identifiability analysis of non-linear dynamical models. - Stefan Hengl; Clemens Kreutz; Jens Timmer; Thomas Maiwald (Bioinform., 2007)

An error model for protein quantification. - Clemens Kreutz; M. M. Bartolome Rodriguez; Thomas Maiwald; Maxmilian Seidl; H. E. Blum; L. Mohr; Jens Timmer (Bioinform., 2007)

Reconstructing gene-regulatory networks from time series, knock-out data, and prior knowledge. - Florian Geier; Jens Timmer; Christian Fleck 001 (BMC Syst. Biol., 2007)

Phase Synchronization and Coherence Analysis: Sensitivity and specificity. - Björn Schelter; Matthias Winterhalder; Jens Timmer; Jürgen Kurths (Int. J. Bifurc. Chaos, 2007)

Detecting Coupling Directions in Multivariate Oscillatory Systems. - Matthias Winterhalder; Björn Schelter; Jens Timmer (Int. J. Bifurc. Chaos, 2007)

Regulatorische Prinzipien und Systemanalyse der bakteriellen Chemotaxis (Regulatory Principles and Systems Analysis of Bacterial Chemotaxis). - Kilian Bartholomé; Jens Timmer (Autom., 2008)

Dynamical modeling and multi-experiment fitting with PottersWheel. - Thomas Maiwald; Jens Timmer (Bioinform., 2008)

Hybrid optimization method with general switching strategy for parameter estimation. - Eva Balsa-Canto; Martin Peifer; Julio R. Banga; Jens Timmer; Christian Fleck 001 (BMC Syst. Biol., 2008)

A systems biology approach to analyse amplification in the JAK2-STAT5 signalling pathway. - Julio Vera; Julie Bachmann; Andrea C. Pfeifer; Verena Becker; Jose A. Hormiga; Néstor Torres Darias; Jens Timmer; Ursula Klingmüller; Olaf Wolkenhauer (BMC Syst. Biol., 2008)

On the Detection of Direct Directed Information Flow in fMRI. - Wolfgang Mader 002; David Feess; Rüdiger Lange; Dorothee Saur; Volkmar Glauche; Cornelius Weiller; Jens Timmer; Björn Schelter (IEEE J. Sel. Top. Signal Process., 2008)

Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood. - Andreas Raue; Clemens Kreutz; Thomas Maiwald; Julie Bachmann; Marcel Schilling; Ursula Klingmüller; Jens Timmer (Bioinform., 2009)

Modeling system states in liver cells: Survival, apoptosis and their modifications in response to viral infection. - Nicole Philippi; Dorothee Walter; Rebekka Schlatter; Karine Ferreira; Michael Ederer; Oliver Sawodny; Jens Timmer; Christoph Borner; Thomas Dandekar (BMC Syst. Biol., 2009)

Effect of Jump Discontinuity for Phase-Randomized Surrogate Data Testing. - Enno Mammen; Swagata Nandi; Thomas Maiwald; Jens Timmer (Int. J. Bifurc. Chaos, 2009)

Estimation of Gene Induction Enables a Relevance-Based Ranking of Gene Sets. - Kilian Bartholomé; Clemens Kreutz; Jens Timmer (J. Comput. Biol., 2009)

Model-based extension of high-throughput to high-content data. - Andrea C. Pfeifer; Daniel Kaschek; Julie Bachmann; Ursula Klingmüller; Jens Timmer (BMC Syst. Biol., 2010)

Combining functional and anatomical connectivity reveals brain networks for auditory language comprehension. - Dorothee Saur; Björn Schelter; Susanne Schnell; David Kratochvil; Hanna Küpper; Philipp Kellmeyer; Dorothee Kümmerer; Stefan Klöppel; Volkmar Glauche; Rüdiger Lange; Wolfgang Mader 002; David Feess; et al. (NeuroImage, 2010)

Seizure prediction in epilepsy: From circadian concepts via probabilistic forecasting to statistical evaluation. - Björn Schelter; Hinnerk Feldwisch-Drentrup; Matthias Ihle; Andreas Schulze-Bonhage; Jens Timmer (EMBC, 2011)

Multivariate analysis of dynamical processes with applications to the neurosciences. - Björn Schelter; Linda Sommerlade; Bettina Platt; Andrea Plano; Marco Thiel; Jens Timmer (EMBC, 2011)

Identification of Preseizure States in Epilepsy: A Data-Driven Approach for Multichannel EEG Recordings. - Hinnerk Feldwisch-Drentrup; Matthäus Staniek; Andreas Schulze-Bonhage; Jens Timmer; Henning Dickten; Christian Erich Elger; Björn Schelter; Klaus Lehnertz (Frontiers Comput. Neurosci., 2011)

Integration of Boolean models exemplified on hepatocyte signal transduction. - Rebekka Schlatter; Nicole Philippi; Gaby Wangorsch; Robert Pick; Oliver Sawodny; Christoph Borner; Jens Timmer; Michael Ederer; Thomas Dandekar (Briefings Bioinform., 2012)

TSSi - an R package for transcription start site identification from 5′ mRNA tag data. - Clemens Kreutz; J. S. Gehring; Daniel Lang 001; Ralf Reski; Jens Timmer; Stefan A. Rensing (Bioinform., 2012)

Comprehensive estimation of input signals and dynamics in biochemical reaction networks. - Max Schelker; Andreas Raue; Jens Timmer; Clemens Kreutz (Bioinform., 2012)

A variational approach to parameter estimation in ordinary differential equations. - Daniel Kaschek; Jens Timmer (BMC Syst. Biol., 2012)

Likelihood based observability analysis and confidence intervals for predictions of dynamic models. - Clemens Kreutz; Andreas Raue; Jens Timmer (BMC Syst. Biol., 2012)

In silico labeling reveals the time-dependent label half-life and transit-time in dynamical systems. - Thomas Maiwald; Julie Blumberg; Andreas Raue; Stefan Hengl; Marcel Schilling; Sherwin K. B. Sy; Verena Becker; Ursula Klingmüller; Jens Timmer (BMC Syst. Biol., 2012)

EPILEPSIAE - A European epilepsy database. - Matthias Ihle; Hinnerk Feldwisch-Drentrup; César Alexandre Teixeira; Adrien Witon; Björn Schelter; Jens Timmer; Andreas Schulze-Bonhage (Comput. Methods Programs Biomed., 2012)

Network modulation during complex syntactic processing. - Dirk-Bart den Ouden; Dorothee Saur; Wolfgang Mader 002; Björn Schelter; Sladjana Lukic; Eisha Wali; Jens Timmer; Cynthia K. Thompson (NeuroImage, 2012)

iVUN: interactive Visualization of Uncertain biochemical reaction Networks. - Corinna Vehlow; Jan Hasenauer; Andrei Kramer; Andreas Raue; Sabine Hug; Jens Timmer; Nicole Radde; Fabian J. Theis; Daniel Weiskopf (BMC Bioinform., 2013)

A numerically efficient implementation of the expectation maximization algorithm for state space models. - Wolfgang Mader 002; Yannick Linke; Malenka Mader; Linda Sommerlade; Jens Timmer; Björn Schelter (Appl. Math. Comput., 2014)

Comparison of approaches for parameter identifiability analysis of biological systems. - Andreas Raue; Johan Karlsson; Maria Pia Saccomani; Mats Jirstrand; Jens Timmer (Bioinform., 2014)

Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach. - Pablo Meyer 001; Thomas Cokelaer; Deepak Chandran; Kyung Hyuk Kim; Po-Ru Loh; George Tucker; Mark Lipson; Bonnie Berger; Clemens Kreutz; Andreas Raue; Bernhard Steiert; Jens Timmer; et al. (BMC Syst. Biol., 2014)

Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems. - Andreas Raue; Bernhard Steiert; Max Schelker; Clemens Kreutz; Tim Maiwald; Helge Hass; Joep Vanlier; Christian Tönsing; Lorenz Adlung; Raphael Engesser; Wolfgang Mader 002; Tim Heinemann; et al. (Bioinform., 2015)

Disentangling the Complexity of HGF Signaling by Combining Qualitative and Quantitative Modeling. - Lorenza Alice D'Alessandro; Regina Samaga; Tim Maiwald; Seong-Hwan Rho; Sandra Bonefas; Andreas Raue; Nao Iwamoto; Alexandra Kienast; Katharina Waldow; Rene Meyer; Marcel Schilling; Jens Timmer; et al. (PLoS Comput. Biol., 2015)

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models. - Jonathan R. Karr; Alex H. Williams; Jeremy D. Zucker; Andreas Raue; Bernhard Steiert; Jens Timmer; Clemens Kreutz; Simon Wilkinson; Brandon A. Allgood; Brian M. Bot; Bruce R. Hoff; Michael R. Kellen; et al. (PLoS Comput. Biol., 2015)

Fast integration-based prediction bands for ordinary differential equation models. - Helge Hass; Clemens Kreutz; Jens Timmer; Daniel Kaschek (Bioinform., 2016)

L1 regularization facilitates detection of cell type-specific parameters in dynamical systems. - Bernhard Steiert; Jens Timmer; Clemens Kreutz (Bioinform., 2016)

Identification of Cell Type-Specific Differences in Erythropoietin Receptor Signaling in Primary Erythroid and Lung Cancer Cells. - Ruth Merkle; Bernhard Steiert; Florian Salopiata; Sofia Depner; Andreas Raue; Nao Iwamoto; Max Schelker; Helge Hass; Marvin Wäsch; Martin E. Böhm; Oliver Mücke; Daniel B. Lipka; et al. (PLoS Comput. Biol., 2016)

Computational Mechanistic Investigation of Chronotropic Effects on Murine Sinus Node Cells. - Benjamin Winkelmann; Callum M. Zgierski-Johnston; Eike Moritz Wülfers; Jens Timmer; Gunnar Seemann (CinC, 2018)

Benchmark problems for dynamic modeling of intracellular processes. - Helge Hass; Carolin Loos; Elba Raimúndez-Álvarez; Jens Timmer; Jan Hasenauer; Clemens Kreutz (Bioinform., 2019)

Extensions of ℓ 1 regularization increase detection specificity for cell-type specific parameters in dynamic models. - Pascal Dolejsch; Helge Hass; Jens Timmer (BMC Bioinform., 2019)

Estimating chain length for time delays in dynamical systems using profile likelihood. - Adrian L. Hauber; Raphael Engesser; Joep Vanlier; Jens Timmer (Bioinform., 2020)

PEtab - Interoperable specification of parameter estimation problems in systems biology. - Leonard Schmiester; Yannik Schälte; Frank T. Bergmann; Tacio Camba; Erika Dudkin; Janine Egert; Fabian Fröhlich; Lara Fuhrmann; Adrian L. Hauber; Svenja Kemmer; Polina A. Lakrisenko; Carolin Loos; et al. (PLoS Comput. Biol., 2021)

Towards Expected Counter - Using Comprehensible Features to Predict Counterattacks. - Henrik Biermann; Franz-Georg Wieland; Jens Timmer; Daniel Memmert; Ashwin Phatak (MLSA@PKDD/ECML, 2022)

Non-Parametric Model-Based Estimation of the Effective Reproduction Number for SARS-CoV-2. - Jacques Hermes; Marcus Rosenblatt; Christian Tönsing; Jens Timmer (Algorithms, 2023)

Uncovering specific mechanisms across cell types in dynamical models. - Adrian L. Hauber; Marcus Rosenblatt; Jens Timmer (PLoS Comput. Biol., 2023)

Likelihood-ratio test statistic for the finite-sample case in nonlinear ordinary differential equation models. - Christian Tönsing; Bernhard Steiert; Jens Timmer; Clemens Kreutz (PLoS Comput. Biol., 2023)