On the Stack-Size of General Tries. - Jérémie Bourdon; Markus E. Nebel; Brigitte Vallée (RAIRO Theor. Informatics Appl., 2001)

Size and path length of Patricia tries: Dynamical sources context. - Jérémie Bourdon (Random Struct. Algorithms, 2001)

Dynamical analysis of alpha-Euclidean algorithms. - Jérémie Bourdon; Benoit Daireaux; Brigitte Vallée (J. Algorithms, 2002)

Pattern Matching Statistics on Correlated Sources. - Jérémie Bourdon; Brigitte Vallée (LATIN, 2006)

Temporal constraints of a gene regulatory network: Refining a qualitative simulation. - Jamil Ahmad; Jérémie Bourdon; Damien Eveillard; Jonathan Fromentin; Olivier F. Roux; Christine Sinoquet (Biosyst., 2009)

A Parallel Scheme for Comparing transcription Factor Binding Sites Matrices. - Solenne Carat; Rémi Houlgatte; Jérémie Bourdon (J. Bioinform. Comput. Biol., 2010)

Statistical properties of factor oracles. - Jérémie Bourdon; Irena Rusu (J. Discrete Algorithms, 2011)

Integrating Quantitative Knowledge into a Qualitative Gene Regulatory Network. - Jérémie Bourdon; Damien Eveillard; Anne Siegel (PLoS Comput. Biol., 2011)

Sources Probabilistes: des séquences aux systèmes. (Probabilistic sources: from sequences to systems). - Jérémie Bourdon (2012)

Generating Discrete Planes with Substitutions. - Valérie Berthé; Jérémie Bourdon; Timo Jolivet; Anne Siegel (WORDS, 2013)

Exploring metabolism flexibility in complex organisms through quantitative study of precursor sets for system outputs. - Oumarou Abdou-Arbi; Sophie Lemosquet; Jaap Van Milgen; Anne Siegel; Jérémie Bourdon (BMC Syst. Biol., 2014)

A combinatorial approach to products of Pisot substitutions. - Valérie Berthé; Jérémie Bourdon; Timo Jolivet; Anne Siegel (CoRR, 2014)

Multivariate Normal Approximation for the Stochastic Simulation Algorithm: Limit Theorem and Applications. - Vincent Picard; Anne Siegel; Jérémie Bourdon (SASB, 2014)

Large deviation properties for patterns. - Jérémie Bourdon; Mireille Régnier (J. Discrete Algorithms, 2014)

OPINION PAPER Evolutionary Constraint-Based Formulation Requires New Bi-level Solving Techniques. - Marko Budinich; Jérémie Bourdon; Abdelhalim Larhlimi; Damien Eveillard (CMSB, 2015)

Computational Methods in Systems Biology. - Jérémie Bourdon; Olivier F. Roux (Biosyst., 2016)

A Logic for Checking the Probabilistic Steady-State Properties of Reaction Networks. - Vincent Picard; Anne Siegel; Jérémie Bourdon (J. Comput. Biol., 2017)

Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. - Sylvain Prigent 001; Clémence Frioux; Simon M. Dittami; Sven Thiele; Abdelhalim Larhlimi; Guillaume Collet; Fabien Gutknecht; Jeanne Got; Damien Eveillard; Jérémie Bourdon; Frédéric Plewniak; Thierry Tonon; et al. (PLoS Comput. Biol., 2017)

Computing Diverse Boolean Networks from Phosphoproteomic Time Series Data. - Misbah Razzaq; Roland Kaminski; Javier Romero 003; Torsten Schaub; Jérémie Bourdon; Carito Guziolowski (CMSB, 2018)

Computational discovery of dynamic cell line specific Boolean networks from multiplex time-course data. - Misbah Razzaq; Loïc Paulevé; Anne Siegel; Julio Saez-Rodriguez; Jérémie Bourdon; Carito Guziolowski (PLoS Comput. Biol., 2018)

OpenComp3d: An open-source framework dedicated to design in power electronics. - A. Morentin; G. Fontes; M. Mannes-Hillesheim; Thierry Meynard; Didier Flumian; Jérémie Bourdon; Hubert Piquet (Math. Comput. Simul., 2019)

Logic and Linear Programs to Understand Cancer Response. - Misbah Razzaq; Lokmane Chebouba; Pierre Le Jeune; Hanen Mhamdi; Carito Guziolowski; Jérémie Bourdon (Automated Reasoning for Systems Biology and Medicine, 2019)

Comparing Probabilistic and Logic Programming Approaches to Predict the Effects of Enzymes in a Neurodegenerative Disease Model. - Sophie Le Bars; Jérémie Bourdon; Carito Guziolowski (CMSB, 2020)

Bayesian Integrative Modeling of Genome-Scale Metabolic and Regulatory Networks. - Hanen Mhamdi; Jérémie Bourdon; Abdelhalim Larhlimi; Mourad Elloumi (Informatics, 2020)

Large-scale regulatory and signaling network assembly through linked open data. - Marie Lefebvre; Alban Gaignard; Maxime Folschette; Jérémie Bourdon; Carito Guziolowski (Database J. Biol. Databases Curation, 2021)

Inferring Boolean Networks from Single-Cell Human Embryo Datasets. - Mathieu Bolteau; Jérémie Bourdon; Laurent David; Carito Guziolowski (ISBRA, 2023)

Predicting weighted unobserved nodes in a regulatory network using answer set programming. - Sophie Le Bars; Mathieu Bolteau; Jérémie Bourdon; Carito Guziolowski (BMC Bioinform., 2023)

Modelling Behavior of Microbiota Metabolic Network Subject to Diets. - Oumarou Abdou-Arbi; Jérémie Bourdon; Anne Siegel (CARI, 2024)

Boolean Network Models of Human Preimplantation Development. - Mathieu Bolteau; Lokmane Chebouba; Laurent David; Jérémie Bourdon; Carito Guziolowski (J. Comput. Biol., 2024)