NIMROD: A program for inference via a normal approximation of the posterior in models with random effects based on ordinary differential equations. - Mélanie Prague; Daniel Commenges; Jérémie Guedj; Julia Drylewicz; Rodolphe Thiébaut (Comput. Methods Programs Biomed., 2013)

Analysis of Hepatitis C Virus Decline during Treatment with the Protease Inhibitor Danoprevir Using a Multiscale Model. - Libin Rong; Jérémie Guedj; Harel Dahari; Daniel J. Coffield Jr.; Micha Levi; Patrick Smith; Alan S. Perelson (PLoS Comput. Biol., 2013)

Erratum to "NIMROD: A program for inference via normal approximation of the posterior in models with random effects based on ordinary differential equations" [Comput. Methods Programs Biomed. 111 (2) (2013) 447-458]. - Mélanie Prague; Daniel Commenges; Jérémie Guedj; Julia Drylewicz; Rodolphe Thiébaut (Comput. Methods Programs Biomed., 2014)

Mathematical Modeling of Bacterial Kinetics to Predict the Impact of Antibiotic Colonic Exposure and Treatment Duration on the Amount of Resistant Enterobacteria Excreted. - Thu Thuy Nguyen; Jérémie Guedj; Elisabeth Chachaty; Jean de Gunzburg; Antoine Andremont; France Mentré (PLoS Comput. Biol., 2014)

Zika virus dynamics: Effects of inoculum dose, the innate immune response and viral interference. - Katharine Best; Dan H. Barouch; Jérémie Guedj; Ruy M. Ribeiro; Alan S. Perelson (PLoS Comput. Biol., 2021)

Success of prophylactic antiviral therapy for SARS-CoV-2: Predicted critical efficacies and impact of different drug-specific mechanisms of action. - Peter Czuppon; Florence Débarre; António Gonçalves; Olivier Tenaillon; Alan S. Perelson; Jérémie Guedj; François Blanquart (PLoS Comput. Biol., 2021)

SARS-CoV-2 viral dynamics in non-human primates. - António Gonçalves; Pauline Maisonnasse; Flora Donati; Mélanie Albert; Sylvie Behillil; Vanessa Contreras; Thibaut Naninck; Romain Marlin; Caroline Solas; Andres Pizzorno; Julien Lemaitre; Nidhal Kahlaoui; et al. (PLoS Comput. Biol., 2021)

Lassa viral dynamics in non-human primates treated with favipiravir or ribavirin. - Guillaume Lingas; Kyle Rosenke; David Safronetz; Jérémie Guedj (PLoS Comput. Biol., 2021)

Modeling the kinetics of the neutralizing antibody response against SARS-CoV-2 variants after several administrations of Bnt162b2. - Quentin Clairon; Mélanie Prague; Delphine Planas; Timothée Bruel; Laurent Hocqueloux; Thierry Prazuck; Olivier Schwartz; Rodolphe Thiébaut; Jérémie Guedj (PLoS Comput. Biol., 2023)

Impact of variants of concern on SARS-CoV-2 viral dynamics in non-human primates. - Aurélien Marc; Romain Marlin; Flora Donati; Mélanie Prague; Marion Kerioui; Cécile Hérate; Marie Alexandre; Nathalie Dereuddre-Bosquet; Julie Bertrand; Vanessa Contreras; Sylvie Behillil; Pauline Maisonnasse; et al. (PLoS Comput. Biol., 2023)

Antiviral capacity of the early CD8 T-cell response is predictive of natural control of SIV infection: Learning in vivo dynamics using ex vivo data. - Bharadwaj Vemparala; Vincent Madelain; Caroline Passaes; Antoine Millet; Véronique Avettand-Fenoel; Ramsès Djidjou-Demasse; Nathalie Dereuddre-Bosquet; Roger Le Grand; Christine Rouzioux; Bruno Vaslin; Asier Sáez-Cirión; Jérémie Guedj; et al. (PLoS Comput. Biol., 2024)

Modelling the effectiveness of antiviral treatment strategies to prevent household transmission of acute respiratory viruses. - Hind Zaaraoui; Clarisse Schumer; Xavier Duval; Bruno Hoen; Lulla Opatowski; Jérémie Guedj (PLoS Comput. Biol., 2024)