Aggressive or moderate drug therapy for infectious diseases? Trade-offs between different treatment goals at the individual and population levels. - Jérémie Scire; Nathanaël Hozé; Hildegard Uecker (PLoS Comput. Biol., 2019)

Practical considerations for measuring the effective reproductive number, Rt. - Katelyn M. Gostic; Lauren McGough; Edward B. Baskerville; Sam Abbott; Keya Joshi; Christine Tedijanto; Rebecca Kahn; Rene Niehus; James A. Hay; Pablo M. De Salazar; Joel Hellewell; Sophie Meakin; et al. (PLoS Comput. Biol., 2020)

Correction: Practical considerations for measuring the effective reproductive number, Rt. - Katelyn M. Gostic; Lauren McGough; Edward B. Baskerville; Sam Abbott; Keya Joshi; Christine Tedijanto; Rebecca Kahn; Rene Niehus; James A. Hay; Pablo M. De Salazar; Joel Hellewell; Sophie Meakin; et al. (PLoS Comput. Biol., 2021)

estimateR: an R package to estimate and monitor the effective reproductive number. - Jérémie Scire; Jana S. Huisman; Ana Grosu; Daniel C. Angst; Adrian Lison; Jinzhou Li; Marloes H. Maathuis; Sebastian Bonhoeffer; Tanja Stadler (BMC Bioinform., 2023)