Extracting Number-Selective Responses from Coherent Oscillations in a Computer Model. - Jeremy A. Miller; Garrett T. Kenyon (Neural Comput., 2007)

Strategies for aggregating gene expression data: The collapseRows R function. - Jeremy A. Miller; Chaochao Cai; Peter Langfelder; Daniel H. Geschwind; Sunil M. Kurian; Daniel R. Salomon; Steve Horvath (BMC Bioinform., 2011)

Large scale digital atlases in neuroscience. - Michael Hawrylycz; David Feng 001; Christopher Lau; Chihchau Kuan; Jeremy A. Miller; Chinh Dang; Lydia Ng (Image Processing, 2014)

Production of a Preliminary Quality Control Pipeline for Single Nuclei RNA-Seq and Its Application in the Analysis of Cell Type Diversity of Post-Mortem Human Brain Neocortex. - Brian D. Aevermann; Jamison M. McCorrison; Pratap Venepally; Rebecca D. Hodge; Trygve E. Bakken; Jeremy A. Miller; Mark Novotny; Danny N. Tran; Francisco Diez-Fuertes; Lena Christiansen; Fan Zhang; Frank Steemers; et al. (PSB, 2017)

Cell type discovery and representation in the era of high-content single cell phenotyping. - Trygve E. Bakken; Lindsay G. Cowell; Brian D. Aevermann; Mark Novotny; Rebecca D. Hodge; Jeremy A. Miller; Alexandra Lee; Ivan Chang; Jamison M. McCorrison; Bali Pulendran; Yu Qian; Nicholas J. Schork; et al. (BMC Bioinform., 2017)

Consistent cross-modal identification of cortical neurons with coupled autoencoders. - Rohan Gala; Agata Budzillo; Fahimeh Baftizadeh; Jeremy A. Miller; Nathan W. Gouwens; Anton Arkhipov; Gabe Murphy; Bosiljka Tasic; Hongkui Zeng; Michael Hawrylycz; Uygar Sümbül (Nat. Comput. Sci., 2021)

FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman-Rafsky non-parametric test. - Yun Zhang 021; Brian D. Aevermann; Trygve E. Bakken; Jeremy A. Miller; Rebecca D. Hodge; Ed S. Lein; Richard H. Scheuermann (Briefings Bioinform., 2021)