Lineage-specific mutational clustering in protein structures predicts evolutionary shifts in function. - Jeremy Adams; Michael J. Mansfield; Daniel J. Richard; Andrew C. Doxey (Bioinform., 2017)

Refget: standardized access to reference sequences. - Andrew D. Yates; Jeremy Adams; Somesh Chaturvedi; Robert Davies; Matthew R. Laird; Rasko Leinonen; Rishi Nag; Nathan C. Sheffield; Oliver Hofmann 001; Thomas M. Keane (Bioinform., 2021)

RNAget: an API to securely retrieve RNA quantifications. - Sean Upchurch; Emilio Palumbo; Jeremy Adams; David Bujold; Guillaume Bourque; Jared Nedzel; Keenan Graham; Meenakshi S. Kagda; Pedro Assis; Benjamin C. Hitz; Emilio Righi; Roderic Guigó; et al. (Bioinform., 2023)