Characterization of systems-level organization through mining large-scale genetic interaction networks. - Jeremy Bellay; Benjamin VanderSluis; Yungil Kim; Sunayan Bandyopadhyay; Chad L. Myers (GENSiPS, 2009)

Distinct Types of Disorder in the Human Proteome: Functional Implications for Alternative Splicing. - Recep Colak; TaeHyung Kim; Magali Michaut; Mark G. F. Sun; Manuel Irimia; Jeremy Bellay; Chad L. Myers; Benjamin J. Blencowe; Philip M. Kim (PLoS Comput. Biol., 2013)

word2vec Skip-Gram with Negative Sampling is a Weighted Logistic PCA. - Andrew J. Landgraf; Jeremy Bellay (CoRR, 2017)

Safe Systems with Unsafe Agents: Challenges and Opportunities. - Jeremy Bellay; J. Timothy Balint; Stephen A. Boxwell; Jeffrey Geppert (AAMAS, 2025)