FusionHunter: identifying fusion transcripts in cancer using paired-end RNA-seq. - Yang Li; Jeremy Chien; David I. Smith; Jian Ma 004 (Bioinform., 2011)

Network-based Survival Analysis Reveals Subnetwork Signatures for Predicting Outcomes of Ovarian Cancer Treatment. - Wei Zhang 076; Takayo Ota; Viji Shridhar; Jeremy Chien; Baolin Wu; Rui Kuang (PLoS Comput. Biol., 2013)

Network-based Transcript Quantification with RNA-Seq Data. - Wei Zhang 076; Kay Minn; Lilong Lin; Baolin Wu; Jeremy Chien; Hui Zheng; Rui Kuang (CoRR, 2014)

Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis. - Wei Zhang 076; Jae-Woong Chang; Lilong Lin; Kay Minn; Baolin Wu; Jeremy Chien; Jeongsik Yong; Hui Zheng; Rui Kuang (PLoS Comput. Biol., 2015)

MutEx: a multifaceted gateway for exploring integrative pan-cancer genomic data. - Jie Ping; Olufunmilola Oyebamiji; Hui Yu; Scott Ness; Jeremy Chien; Fei Ye; Huining Kang; David C. Samuels; Sergey Ivanov; Danqian Chen; Ying-Yong Zhao; Yan Guo (Briefings Bioinform., 2020)

A Bioinformatics Analysis of Ovarian Cancer Data Using Machine Learning. - Vincent Schilling; Peter Beyerlein; Jeremy Chien (Algorithms, 2023)