Using Multiple Levels of Learning and Diverse Evidence to Uncover Coordinately Controlled Genes. - Mark W. Craven; David Page; Jude W. Shavlik; Joseph Bockhorst; Jeremy D. Glasner (ICML, 2000)

A Probabilistic Learning Approach to Whole-Genome Operon Prediction. - Mark W. Craven; David Page; Jude W. Shavlik; Joseph Bockhorst; Jeremy D. Glasner (ISMB, 2000)

Modelling regulatory pathways in E. coli from time series expression profiles. - Irene M. Ong; Jeremy D. Glasner; David Page (ISMB, 2002)

Interpreting microarray expression data using text annotating the genes. - Michael Molla; Peter Andreae; Jeremy D. Glasner; Frederick R. Blattner; Jude W. Shavlik (Inf. Sci., 2002)

Predicting bacterial transcription units using sequence and expression data. - Joseph Bockhorst; Yu Qiu; Jeremy D. Glasner; Mingzhu Liu; Frederick R. Blattner; Mark Craven (ISMB (Supplement of Bioinformatics), 2003)

A Bayesian Network Approach to Operon Prediction. - Joseph Bockhorst; Mark W. Craven; David Page; Jude W. Shavlik; Jeremy D. Glasner (Bioinform., 2003)

ASAP, a systematic annotation package for community analysis of genomes. - Jeremy D. Glasner; Paul Liss; Guy Plunkett III; Aaron E. Darling; Tejasvini Prasad; Michael Rusch; Alexis Byrnes; Michael K. Gilson; Bryan S. Biehl; Frederick R. Blattner; Nicole T. Perna (Nucleic Acids Res., 2003)

ASAP: a resource for annotating, curating, comparing, and disseminating genomic data. - Jeremy D. Glasner; Michael Rusch; Paul Liss; Guy Plunkett III; Eric L. Cabot; Aaron E. Darling; Bradley D. Anderson; Paul Infield-Harm; Michael C. Gilson; Nicole T. Perna (Nucleic Acids Res., 2006)

Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria. - Jeremy D. Glasner; Guy Plunkett III; Bradley D. Anderson; David J. Baumler; Bryan S. Biehl; Valerie Burland; Eric L. Cabot; Aaron E. Darling; Bob Mau; Eric C. Neeno-Eckwall; David Pot; Yu Qiu; et al. (Nucleic Acids Res., 2008)

Reordering contigs of draft genomes using the Mauve Aligner. - Anna I. Rissman; Bob Mau; Bryan S. Biehl; Aaron E. Darling; Jeremy D. Glasner; Nicole T. Perna (Bioinform., 2009)

Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens. - Sam Zaremba; Mila Ramos-Santacruz; Thomas Hampton; Panna Shetty; Joel Fedorko; Jon Whitmore; John M. Greene; Nicole T. Perna; Jeremy D. Glasner; Guy Plunkett III; Matthew Shaker; David Pot (BMC Bioinform., 2009)

chipD: a web tool to design oligonucleotide probes for high-density tiling arrays. - Yann S. Dufour; Gary E. Wesenberg; Andrew J. Tritt; Jeremy D. Glasner; Nicole T. Perna; Julie C. Mitchell; Timothy J. Donohue (Nucleic Acids Res., 2010)

The evolution of metabolic networks of E. coli. - David J. Baumler; Roman G. Peplinski; Jennifer L. Reed; Jeremy D. Glasner; Nicole T. Perna (BMC Syst. Biol., 2011)