Steady-State Kinetic Modeling Constrains Cellular Resting States and Dynamic Behavior. - Jeremy E. Purvis; Ravi Radhakrishnan; Scott L. Diamond (PLoS Comput. Biol., 2009)

Molecular Docking of Cathepsin L Inhibitors in the Binding Site of Papain. - Mary Pat Beavers; Michael C. Myers; Parag P. Shah; Jeremy E. Purvis; Scott L. Diamond; Barry S. Cooperman; Donna M. Huryn; Amos B. Smith III (J. Chem. Inf. Model., 2010)

SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data. - Joshua D. Welch; Ziqing Liu; Li Wang; Junjie Lu; Paul Lerou; Jeremy E. Purvis; Li Qian; Alexander J. Hartemink; Jan F. Prins (RECOMB, 2016)

In and out of the nucleus: CNN based segmentation of cell nuclei from images of a translocating sensor. - Tarek M. Zikry; Katarzyna M. Kedziora; Michael R. Kosorok; Jeremy E. Purvis (PEARC, 2019)

Inferring the structures of signaling motifs from paired dynamic traces of single cells. - Raymond A. Haggerty; Jeremy E. Purvis (PLoS Comput. Biol., 2021)

Spherical Rotation Dimension Reduction with Geometric Loss Functions. - Hengrui Luo; Jeremy E. Purvis; Didong Li (J. Mach. Learn. Res., 2024)

Cellograph: a semi-supervised approach to analyzing multi-condition single-cell RNA-sequencing data using graph neural networks. - Jamshaid A. Shahir; Natalie Stanley; Jeremy E. Purvis (BMC Bioinform., 2024)