A three-dimensional digital atlas of the zebrafish brain. - Jeremy F. P. Ullmann; Gary J. Cowin; Nyoman D. Kurniawan; Shaun P. Collin (NeuroImage, 2010)

Segmentation of the C57BL/6J mouse cerebellum in magnetic resonance images. - Jeremy F. P. Ullmann; Marianne D. Keller; Charles Watson; Andrew L. Janke; Nyoman D. Kurniawan; Zhengyi Yang 004; Kay Richards; George Paxinos; Gary F. Egan; Steven Petrou; Perry F. Bartlett; Graham J. Galloway; et al. (NeuroImage, 2012)

A segmentation protocol and MRI atlas of the C57BL/6J mouse neocortex. - Jeremy F. P. Ullmann; Charles Watson; Andrew L. Janke; Nyoman D. Kurniawan; David C. Reutens (NeuroImage, 2013)

Visualization of mouse barrel cortex using ex-vivo track density imaging. - Nyoman D. Kurniawan; Kay L. Richards; Zhengyi Yang 004; David She; Jeremy F. P. Ullmann; Randal X. Moldrich; Sha Liu; Javier Urriola Yaksic; Gayeshika Leanage; Irina Kharatishvili; Verena Wimmer; Fernando Calamante; et al. (NeuroImage, 2014)

An ontologically consistent MRI-based atlas of the mouse diencephalon. - Charles Watson; Andrew L. Janke; Carlo Hämäläinen; Shahrzad Moeiniyan Bagheri; George Paxinos; David C. Reutens; Jeremy F. P. Ullmann (NeuroImage, 2017)

Whole-volume clustering of time series data from zebrafish brain calcium images via mixture modeling. - Hien Duy Nguyen; Jeremy F. P. Ullmann; Geoffrey J. McLachlan; Venkatakaushik Voleti; Wenze Li; Elizabeth M. C. Hillman; David C. Reutens; Andrew L. Janke (Stat. Anal. Data Min., 2018)