Deducing Causal Relationships in CCS. - Jeremy Gunawardena (FSTTCS, 1989)

Geometric Logic, Causality and Event Structures. - Jeremy Gunawardena (CONCUR, 1991)

Causal automata. - Jeremy Gunawardena (Theor. Comput. Sci., 1992)

A Generalized Event Structure for the Muller Unfolding of a Safe Net. - Jeremy Gunawardena (CONCUR, 1993)

A Dynamic Approach to Timed Behaviour. - Jeremy Gunawardena (CONCUR, 1994)

Min-max functions. - Jeremy Gunawardena (Discret. Event Dyn. Syst., 1994)

Homotopy and Concurrency. - Jeremy Gunawardena (Bull. EATCS, 1994)

Recent Developments in the Mathematics of Reactive Systems (Extended Abstract). - Jeremy Gunawardena (CONCUR, 1997)

Homotopy and Concurrency. - Jeremy Gunawardena (Current Trends in Theoretical Computer Science, 2001)

Iterates of maps which are non-expansive in Hilbert's projective metric. - Jeremy Gunawardena; Cormac Walsh (Kybernetika, 2003)

From max-plus algebra to nonexpansive mappings: a nonlinear theory for discrete event systems. - Jeremy Gunawardena (Theor. Comput. Sci., 2003)

Signals and Systems: Towards a Systems Biology of Signal Transduction. - Jeremy Gunawardena (Proc. IEEE, 2008)

PHOSIDA 2011: the posttranslational modification database. - Florian Gnad; Jeremy Gunawardena; Matthias Mann 002 (Nucleic Acids Res., 2011)

Proteus: a web-based, context-specific modelling tool for molecular networks. - Florian Gnad; Javier Estrada; Jeremy Gunawardena (Bioinform., 2012)

Robust network structure of the Sln1-Ypd1-Ssk1 three-component phospho-relay prevents unintended activation of the HOG MAPK pathway in Saccharomyces cerevisiae. - Joseph P. Dexter; Ping Xu; Jeremy Gunawardena; Megan N. McClean (BMC Syst. Biol., 2015)

Bayesian modeling suggests that IL-12 (p40), IL-13 and MCP-1 drive murine cytokine networks in vivo. - Sarah L. Field; Tathagata Dasgupta; Michele Cummings; Richard S. Savage; Julius Adebayo; Hema McSara; Jeremy Gunawardena; Nicolas M. Orsi (BMC Syst. Biol., 2015)

Cellular Interrogation: Exploiting Cell-to-Cell Variability to Discriminate Regulatory Mechanisms in Oscillatory Signalling. - Javier Estrada; Natalie Andrew; Daniel Gibson; Frederick Chang; Florian Gnad; Jeremy Gunawardena (PLoS Comput. Biol., 2016)

Identification of Non-invasive Cytokine Biomarkers for Polycystic Ovary Syndrome Using Supervised Machine Learning. - Daniela Silvia Perry; Jeremy Gunawardena; Nicolas M. Orsi (BCB, 2018)

Robustness and parameter geography in post-translational modification systems. - Kee-Myoung Nam; Benjamin M. Gyori; Silviana V. Amethyst; Daniel J. Bates; Jeremy Gunawardena (PLoS Comput. Biol., 2020)

Learning Outside the Brain: Integrating Cognitive Science and Systems Biology. - Jeremy Gunawardena (Proc. IEEE, 2022)