Developing measures for microbial genome assembly quality control. - Rachel M. Adams; Jason B. Harris; Jeremy J. Jay; Beth G. Johnson; Miriam L. Land; Loren J. Hauser (BMC Bioinform., 2010)

A Systematic Comparison of Genome Scale Clustering Algorithms - (Extended Abstract). - Jeremy J. Jay; John D. Eblen; Yun Zhang 013; Mikael Benson; Andy D. Perkins; Arnold M. Saxton; Brynn H. Voy; Elissa J. Chesler; Michael A. Langston (ISBRA, 2011)

Autism candidate genes via mouse phenomics. - Terrence F. Meehan; Christopher J. Carr; Jeremy J. Jay; Carol J. Bult; Elissa J. Chesler; Judith A. Blake (J. Biomed. Informatics, 2011)

On Bipartite Graph Decomposition in the Presence of Noise, with Applications to Biological Data Clustering. - Charles A. Phillips; Jeremy J. Jay; Erich J. Baker; Elissa J. Chesler; Michael A. Langston (CTW, 2012)

A systematic comparison of genome-scale clustering algorithms. - Jeremy J. Jay; John D. Eblen; Yun Zhang 013; Mikael Benson; Andy D. Perkins; Arnold M. Saxton; Brynn H. Voy; Elissa J. Chesler; Michael A. Langston (BMC Bioinform., 2012)

GeneWeaver: a web-based system for integrative functional genomics. - Erich J. Baker; Jeremy J. Jay; Jason A. Bubier; Michael A. Langston; Elissa J. Chesler (Nucleic Acids Res., 2012)

A Context-Driven Gene Prioritization Method for Web-Based Functional Genomics. - Jeremy J. Jay; Erich J. Baker; Elissa J. Chesler (ISBRA, 2013)

EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms. - Daniel A. Janies; Zachary L. Witter; Gregorio V. Linchangco; David W. Foltz; Allison K. Miller; Alexander M. Kerr; Jeremy J. Jay; Robert W. Reid; Gregory A. Wray (BMC Bioinform., 2016)