Topological-based classification using artificial gene networks. - Chun-Chi Liu; Wen-Shyen E. Chen; Pei-Chun Chang; Jeremy J. W. Chen (IEEE ICCI, 2005)

CRSD: a comprehensive web server for composite regulatory signature discovery. - Chun-Chi Liu; Chin-Chung Lin; Wen-Shyen E. Chen; Hsuan-Yu Chen; Pei-Chun Chang; Jeremy J. W. Chen; Pan-Chyr Yang (Nucleic Acids Res., 2006)

Genome-wide identification of specific oligonucleotides using artificial neural network and computational genomic analysis. - Chun-Chi Liu; Chin-Chung Lin; Ker-Chau Li; Wen-Shyen E. Chen; Jiun-Ching Chen; Ming-Te Yang; Pan-Chyr Yang; Pei-Chun Chang; Jeremy J. W. Chen (BMC Bioinform., 2007)

DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections. - Chun-Chi Liu; Yu-Ting Tseng; Wenyuan Li 006; Chia-Yu Wu; Ilya Mayzus; Andrey Rzhetsky; Fengzhu Sun; Michael S. Waterman; Jeremy J. W. Chen; Preet M. Chaudhary; Joseph Loscalzo; Edward Crandall; et al. (Nucleic Acids Res., 2014)

IIIDB: a database for isoform-isoform interactions and isoform network modules. - Yu-Ting Tseng; Wenyuan Li 006; Ching-Hsien Chen; Shi-Hua Zhang; Jeremy J. W. Chen; Xianghong Jasmine Zhou; Chun-Chi Liu (BMC Genom., 2015)

RiceATM: a platform for identifying the association between rice agronomic traits and miRNA expression. - Wei-Ting Liu; Chia-Chun Yang; Rong-Kuen Chen; Woei-Shyuan Jwo; Chih-Wen Wu; Wen-Yen Ting; Dah-Pyng Shung; Chun-Chi Liu; Jeremy J. W. Chen (Database J. Biol. Databases Curation, 2016)