Epik: a software program for pK a prediction and protonation state generation for drug-like molecules. - John C. Shelley; Anuradha Cholleti; Leah L. Frye; Jeremy R. Greenwood; Mathew R. Timlin; Makoto Uchimaya (J. Comput. Aided Mol. Des., 2007)

Improving database enrichment through ensemble docking. - Shashidhar N. Rao; Paul C. Sanschagrin; Jeremy R. Greenwood; Matthew P. Repasky; Woody Sherman; Ramy Farid (J. Comput. Aided Mol. Des., 2008)

Towards the comprehensive, rapid, and accurate prediction of the favorable tautomeric states of drug-like molecules in aqueous solution. - Jeremy R. Greenwood; David Calkins; Arron P. Sullivan; John C. Shelley (J. Comput. Aided Mol. Des., 2010)

Docking performance of the glide program as evaluated on the Astex and DUD datasets: a complete set of glide SP results and selected results for a new scoring function integrating WaterMap and glide. - Matthew P. Repasky; Robert B. Murphy; Jay L. Banks; Jeremy R. Greenwood; Ivan Tubert-Brohman; Sathesh Bhat; Richard A. Friesner (J. Comput. Aided Mol. Des., 2012)

Docking Covalent Inhibitors: A Parameter Free Approach To Pose Prediction and Scoring. - Kai Zhu; Kenneth W. Borrelli; Jeremy R. Greenwood; Tyler Day; Robert Abel; Ramy Farid; Edward Harder (J. Chem. Inf. Model., 2014)