Towards Efficient Supercomputing: A Quest for the Right Metric. - Chung-Hsing Hsu; Wu-chun Feng; Jeremy S. Archuleta (IPDPS, 2005)

Grid applications - Parallel genomic sequence-searching on an ad-hoc grid: experiences, lessons learned, and implications. - Mark K. Gardner; Wu-chun Feng; Jeremy S. Archuleta; Heshan Lin; Xiaosong Ma (SC, 2006)

A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search. - Jeremy S. Archuleta; Eli Tilevich; Wu-chun Feng (ICSM, 2007)

Semantics-based distributed I/O for mpiBLAST. - Pavan Balaji; Wu-chun Feng; Jeremy S. Archuleta; Heshan Lin; Rajkumar Kettimuthu; Rajeev Thakur; Xiaosong Ma (PPoPP, 2008)

Multi-dimensional characterization of temporal data mining on graphics processors. - Jeremy S. Archuleta; Yong Cao 003; Thomas Scogland; Wu-chun Feng (IPDPS, 2009)

Towards Chip-on-Chip Neuroscience: Fast Mining of Frequent Episodes Using Graphics Processors - Yong Cao 003; Debprakash Patnaik; Sean P. Ponce; Jeremy S. Archuleta; Patrick Butler; Wu-chun Feng; Naren Ramakrishnan (CoRR, 2009)

Towards chip-on-chip neuroscience: fast mining of neuronal spike streams using graphics hardware. - Yong Cao 003; Debprakash Patnaik; Sean P. Ponce; Jeremy S. Archuleta; Patrick Butler; Wu-chun Feng; Naren Ramakrishnan (Conf. Computing Frontiers, 2010)

MOON: MapReduce On Opportunistic eNvironments. - Heshan Lin; Xiaosong Ma; Jeremy S. Archuleta; Wu-chun Feng; Mark K. Gardner; Zhe Zhang 005 (HPDC, 2010)

Missing genes in the annotation of prokaryotic genomes. - Andrew S. Warren; Jeremy S. Archuleta; Wu-chun Feng; João Carlos Setubal (BMC Bioinform., 2010)

Global-scale distributed I/O with ParaMEDIC. - Pavan Balaji; Wu-chun Feng; Heshan Lin; Jeremy S. Archuleta; Satoshi Matsuoka; Andrew S. Warren; João Carlos Setubal; Ewing L. Lusk; Rajeev Thakur; Ian T. Foster; Daniel S. Katz; Shantenu Jha; et al. (Concurr. Comput. Pract. Exp., 2010)

Parallel Mining of Neuronal Spike Streams on Graphics Processing Units. - Yong Cao 003; Debprakash Patnaik; Sean P. Ponce; Jeremy S. Archuleta; Patrick Butler; Wu-chun Feng; Naren Ramakrishnan (Int. J. Parallel Program., 2012)

Evaluating Dynamic File Striping For Lustre. - Joel Reed; Jeremy S. Archuleta; Michael J. Brim; Joshua K. Lothian (CoRR, 2015)