Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions. - Jeremy S. Edwards; Bernhard O. Palsson (BMC Bioinform., 2000)

Dynamic simulation of the human red blood cell metabolic network. - Neema Jamshidi; Jeremy S. Edwards; Tom Fahland; George M. Church; Bernhard O. Palsson (Bioinform., 2001)

Suitability and Utility of Computational Analysis Tools: Characterization of Erythrocyte Parameter Variation. - Ryan E. Altenbaugh; Kenneth J. Kauffman; Jeremy S. Edwards (Pacific Symposium on Biocomputing, 2003)

Time accelerated Monte Carlo simulations of biological networks using the binomial r-leap method. - Abhijit Chatterjee; Kapil Mayawala; Jeremy S. Edwards; Dionisios G. Vlachos (Bioinform., 2005)

Gene expression measurement technologies: innovations and ethical considerations. - Jessica R. Goodkind; Jeremy S. Edwards (Comput. Chem. Eng., 2005)

Spatio-temporal modeling of signaling protein recruitment to EGFR. - Ming-yu Hsieh; Shujie Yang; Mary Raymond-Stinz; Jeremy S. Edwards; Bridget S. Wilson (BMC Syst. Biol., 2010)

An Adaptive Coarse Graining Method for Signal Transduction in Three Dimensions. - Michelle Archuleta; Jason E. McDermott; Jeremy S. Edwards; Haluk Resat (Fundam. Informaticae, 2012)

The impact of high density receptor clusters on VEGF signaling. - Ye Chen; Christopher Short; Ádám M. Halász; Jeremy S. Edwards (HSB, 2013)

Analytical Solution of Steady-State Equations for Chemical Reaction Networks with Bilinear Rate Laws. - Ádám M. Halász; Hong-Jian Lai; Meghan McCabe Pryor; Krishnan Radhakrishnan; Jeremy S. Edwards (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

A highly sensitive ISFET using pH-to-current conversion for real-time DNA sequencing. - Mohammad M. Uzzal; Payman Zarkesh-Ha; Jeremy S. Edwards; Ezequiel Coelho; Priyanka Rawat (SoCC, 2014)

Avalanche ISFET: A highly sensitive pH sensor for genome sequencing. - Payman Zarkesh-Ha; Jeremy S. Edwards; Paul Szauter (BioCAS, 2015)

Behavioral modeling of drain current of an avalanche ISFET near breakdown. - Mohammad M. Uzzal; Payman Zarkesh-Ha; Paul Szauter; Jeremy S. Edwards (SoCC, 2016)

Analytical noise model for avalanche ISFET sensor suitable for Next Generation Sequencing. - Mohammad M. Uzzal; Payman Zarkesh-Ha; Paul Szauter; Jeremy S. Edwards (SoCC, 2016)

Characterization of the Experimentally Observed Clustering of VEGF Receptors. - Emine Güven; Michael J. Wester; Bridget S. Wilson; Jeremy S. Edwards; Ádám M. Halász (CMSB, 2018)

Extracting Landscape Features from Single Particle Trajectories. - Ádám M. Halász; Brandon L. Clark; Ouri Maler; Jeremy S. Edwards (HSB, 2019)

Spatial Stochastic Model of the Pre-B Cell Receptor. - Romica Kerketta; M. Frank Erasmus; Bridget S. Wilson; Ádám M. Halász; Jeremy S. Edwards (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)

Pharos 2023: an integrated resource for the understudied human proteome. - Keith J. Kelleher; Timothy Sheils; Stephen L. Mathias; Jeremy J. Yang; Vincent T. Metzger; Vishal B. Siramshetty; Dac-Trung Nguyen; Lars Juhl Jensen; Dusica Vidovic; Stephan C. Schürer; Jayme Holmes; Karlie R. Sharma; et al. (Nucleic Acids Res., 2023)