Detecting protein dissimilarities in multiple alignments using Bayesian variable selection. - Sinae Kim; Jerry W. Tsai; Ioannis Kagiampakis; Patricia LiWang; Marina Vannucci (Bioinform., 2007)

An Information Measure of the Quality of Protein Secondary Structure Prediction. - Rosemarie Swanson; Ioannis Kagiampakis; Jerry W. Tsai (J. Comput. Biol., 2008)

Characterizing the regularity of tetrahedral packing motifs in protein tertiary structure. - Ryan Day; Kristin P. Lennox; David B. Dahl; Marina Vannucci; Jerry W. Tsai (Bioinform., 2010)

Fine grained sampling of residue characteristics using molecular dynamics simulation. - Hyun Joo; Xiaotao Qu; Rosemarie Swanson; C. Michael McCallum; Jerry W. Tsai (Comput. Biol. Chem., 2010)

Relative Packing Groups in Template-Based Structure Prediction: Cooperative Effects of True Positive Constraints. - Ryan Day; Xiaotao Qu; Rosemarie Swanson; Zach Bohannan; Robert Bliss; Jerry W. Tsai (J. Comput. Biol., 2011)

Near-Native Protein Loop Sampling Using Nonparametric Density Estimation Accommodating Sparcity. - Hyun Joo; Archana G. Chavan; Ryan Day; Kristin P. Lennox; Paul Sukhanov; David B. Dahl; Marina Vannucci; Jerry W. Tsai (PLoS Comput. Biol., 2011)

Understanding the general packing rearrangements required for successful template based modeling of protein structure from a CASP experiment. - Ryan Day; Hyun Joo; Archana G. Chavan; Kristin P. Lennox; Yian Ann Chen; David B. Dahl; Marina Vannucci; Jerry W. Tsai (Comput. Biol. Chem., 2013)

KScons: a Bayesian approach for protein residue contact prediction using the knob-socket model of protein tertiary structure. - Qiwei Li 001; David B. Dahl; Marina Vannucci; Hyun Joo; Jerry W. Tsai (Bioinform., 2016)