Weekend Triple Billionaire. - Jerven T. Bolleman; Thomas Kappler (SWAT4LS, 2009)

Provenance and Evidence in UniProtKB. - Jerven T. Bolleman; Alain Gateau; Sebastien Gehant; Nicole Redaschi (SWAT4LS, 2010)

Catching Inconsistencies with the Semantic Web: A Biocuration Case Study. - Jerven T. Bolleman; Sebastien Gehant; Nicole Redaschi (SWAT4LS, 2012)

Introducing glycomics data into the Semantic Web. - Kiyoko F. Aoki-Kinoshita; Jerven T. Bolleman; Matthew P. Campbell; Shin Kawano; Jin-Dong Kim; Thomas Lütteke; Masaaki Matsubara; Shujiro Okuda; René Ranzinger; Hiromichi Sawaki; Toshihide Shikanai; Daisuke Shinmachi; et al. (J. Biomed. Semant., 2013)

The EBI RDF platform: linked open data for the life sciences. - Simon Jupp; James Malone; Jerven T. Bolleman; Marco Brandizi; Mark Davies; Leyla J. García; Anna Gaulton; Sebastien Gehant; Camille Laibe; Nicole Redaschi; Sarala M. Wimalaratne; Maria Jesus Martin; et al. (Bioinform., 2014)

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. - Toshiaki Katayama; Mark D. Wilkinson; Kiyoko F. Aoki-Kinoshita; Shuichi Kawashima; Yasunori Yamamoto; Atsuko Yamaguchi; Shinobu Okamoto; Shin Kawano; Jin-Dong Kim; Yue Wang 040; Hongyan Wu; Yoshinobu Kano; et al. (J. Biomed. Semant., 2014)

BioBenchmark Toyama 2012: an evaluation of the performance of triple stores on biological data. - Hongyan Wu; Toyofumi Fujiwara; Yasunori Yamamoto; Jerven T. Bolleman; Atsuko Yamaguchi (J. Biomed. Semant., 2014)

SPARQL-enabled identifier conversion with Identifiers.org. - Sarala M. Wimalaratne; Jerven T. Bolleman; Nick S. Juty; Toshiaki Katayama; Michel Dumontier; Nicole Redaschi; Nicolas Le Novère; Henning Hermjakob; Camille Laibe (Bioinform., 2015)

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. - Jerven T. Bolleman; Christopher J. Mungall; Francesco Strozzi; Joachim Baran; Michel Dumontier; Raoul Jean Pierre Bonnal; Robert M. Buels; Robert Hoehndorf; Takatomo Fujisawa; Toshiaki Katayama; Peter J. A. Cock (J. Biomed. Semant., 2016)

Interoperability and FAIRness through a novel combination of Web technologies. - Mark D. Wilkinson; Ruben Verborgh; Luiz Olavo Bonino da Silva Santos; Tim Clark; Morris A. Swertz; Fleur D. L. Kelpin; Alasdair J. G. Gray; Erik A. Schultes; Erik M. van Mulligen; Paolo Ciccarese; Mark Thompson 002; Rajaram Kaliyaperumal; et al. (PeerJ Prepr., 2016)

Interoperability and FAIRness through a novel combination of Web technologies. - Mark D. Wilkinson; Ruben Verborgh; Luiz Olavo Bonino da Silva Santos; Tim Clark; Morris A. Swertz; Fleur D. L. Kelpin; Alasdair J. G. Gray; Erik A. Schultes; Erik M. van Mulligen; Paolo Ciccarese; Arnold Kuzniar; Anand K. Gavai; et al. (PeerJ Prepr., 2017)

SemanticGenomeGraphs. - Simon Heumos; Jerven T. Bolleman (SWAT4HCLS, 2019)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. - Toshiaki Katayama; Shuichi Kawashima; Gos Micklem; Shin Kawano; Jin-Dong Kim; Simon Kocbek; Shinobu Okamoto; Yue Wang 040; Hongyan Wu; Atsuko Yamaguchi; Yasunori Yamamoto; Erick Antezana; et al. (F1000Research, 2019)

Enzyme annotation in UniProtKB using Rhea. - Anne Morgat; Thierry Lombardot; Elisabeth Coudert; Kristian B. Axelsen; Teresa Batista Neto; Sebastien Gehant; Parit Bansal; Jerven T. Bolleman; Elisabeth Gasteiger; Edouard De Castro; Delphine Baratin; Monica Pozzato; et al. (Bioinform., 2020)

BioHackathon 2015: Semantics of data for life sciences and reproducible research. - Rutger A. Vos; Toshiaki Katayama; Hiroyuki Mishima; Shin Kawano; Shuichi Kawashima; Jin-Dong Kim; Yuki Moriya; Toshiaki Tokimatsu; Atsuko Yamaguchi; Yasunori Yamamoto; Hongyan Wu; Peter Amstutz; et al. (F1000Research, 2020)

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase. - Alistair MacDougall; Vladimir Volynkin; Rabie Saidi; Diego Poggioli; Hermann Zellner; Emma Hatton-Ellis; Vishal Joshi; Claire O'Donovan; Sandra E. Orchard; Andrea H. Auchincloss; Delphine Baratin; Jerven T. Bolleman; et al. (Bioinform., 2021)

UniProt: the universal protein knowledgebase in 2021. - Alex Bateman; Maria Jesus Martin; Sandra E. Orchard; Michele Magrane; Rahat Agivetova; Shadab Ahmad; Emanuele Alpi; Emily H. Bowler-Barnett; Ramona Britto; Borisas Bursteinas; Hema Bye-A-Jee; Ray Coetzee; et al. (Nucleic Acids Res., 2021)

SwissBioPics - an interactive library of cell images for the visualization of subcellular location data. - Philippe Le Mercier; Jerven T. Bolleman; Edouard De Castro; Elisabeth Gasteiger; Parit Bansal; Andrea H. Auchincloss; Emmanuel Boutet; Lionel Breuza; Cristina Casals-Casas; Anne Estreicher; Marc Feuermann; Damien Lieberherr; et al. (Database J. Biol. Databases Curation, 2022)

Making expert curated knowledge graphs FAIR. - Jerven T. Bolleman; Alan J. Bridge; Nicole Redaschi; UniProt Consortium (SWAT4HCLS, 2023)

UniProt, ChEBI and IDSM Sachem: exploring biologically relevant ligands. - Sebastien Gehant; Elisabeth Coudert; Anne Morgat; Jerven T. Bolleman; Nicole Redaschi; Alan J. Bridge; UniProt Consortium (SWAT4HCLS, 2023)

Annotation of biologically relevant ligands in UniProtKB using ChEBI. - Elisabeth Coudert; Sebastien Gehant; Edouard De Castro; Monica Pozzato; Delphine Baratin; Teresa Batista Neto; Christian J. A. Sigrist; Nicole Redaschi; Alan J. Bridge; Lucila Aimo; Ghislaine Argoud-Puy; Andrea H. Auchincloss; et al. (Bioinform., 2023)

LLM-based SPARQL Query Generation from Natural Language over Federated Knowledge Graphs. - Vincent Emonet; Jerven T. Bolleman; Severine Duvaud; Tarcisio Mendes de Farias; Ana Claudia Sima (HGAIS@ISWC, 2024)

FAIR Service Descriptions: enriching life science SPARQL endpoints. - Jerven T. Bolleman; Alan J. Bridge; Nicole Redaschi (SWAT4HCLS, 2024)

CHIST-ERA Triple: improving data interoperability and federation across RDF knowledge graphs and Solid Pods. - Jerven T. Bolleman; Elias Crum; Iulian Dragan; Jakub Galgonek; Mark Ibberson; Tarcisio Mendes de Farias; Marek Moos; Marco Pagni; Ruben Taelman; Jirí Vondrásek; Ana Claudia Sima (SWAT4HCLS, 2024)

A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications. - Jerven T. Bolleman; Vincent Emonet; Adrian M. Altenhoff; Amos Bairoch; Marie-Claude Blatter; Alan J. Bridge; Severine Duvaud; Elisabeth Gasteiger; Dmitry Kuznetsov; Sébastien Moretti; Pierre-André Michel; Anne Morgat; et al. (CoRR, 2024)