Reaction mechanisms in peptide synthesis. Part 1. Semiquantitative characteristics of the reactivity of 2-methyl-5(4H)-oxazolone with water and ammonia in the gas phase and weakly polar media. - Jerzy Ciarkowski; Francis M. F. Chen; N. Leo Benoiton (J. Comput. Aided Mol. Des., 1991)

Reaction mechanisms in peptide synthesis. Part 2. Tautomerism of the peptide bond. - Jerzy Ciarkowski; Francis M. F. Chen; N. Leo Benoiton (J. Comput. Aided Mol. Des., 1991)

Mechanism of action of aspartic proteinases: Application of transition-state analogue theory. - Stanislaw Oldziej; Jerzy Ciarkowski (J. Comput. Aided Mol. Des., 1996)

Molecular modeling of the neurophysin I/oxytocin complex. - Rajmund Kazmierkiewicz; Cezary Czaplewski; B. Lammek; Jerzy Ciarkowski (J. Comput. Aided Mol. Des., 1997)

Molecular modeling of the human vasopressin V2 receptor/agonist complex. - Cezary Czaplewski; Rajmund Kazmierkiewicz; Jerzy Ciarkowski (J. Comput. Aided Mol. Des., 1998)

Essential dynamics/factor analysis for the interpretation of molecular dynamics trajectories. - Rajmund Kazmierkiewicz; Cezary Czaplewski; B. Lammek; Jerzy Ciarkowski (J. Comput. Aided Mol. Des., 1999)

Molecular Modeling of the Catalytic Domain of Serine/threonine Phosphatase-1with the Zn2+ and Mn2+ Di-nuclear Ion Centers in the Active Site. - Edyta Wozniak; Stanislaw Oldziej; Jerzy Ciarkowski (Comput. Chem., 2000)

Molecular modeling of interactions of the non-peptide antagonist YM087 with the human vasopressin V1a, V2 receptors and with oxytocin receptors. - Artur Gieldon; Rajmund Kazmierkiewicz; Rafal Slusarz; Jerzy Ciarkowski (J. Comput. Aided Mol. Des., 2001)