Informed Parsimonious Inference of Prototypical Genetic Sequences. - Aleksandar Milosavljevic; David Haussler; Jerzy Jurka (COLT, 1989)

Novel families of interspersed repetitive elements from the human genome. - Jerzy Jurka (Nucleic Acids Res., 1990)

Discovering simple DNA sequences by the algorithmic significance method. - Aleksandar Milosavljevic; Jerzy Jurka (Comput. Appl. Biosci., 1993)

Discovery by Minimal Length Encoding: A Case Study in Molecular Evolution. - Aleksandar Milosavljevic; Jerzy Jurka (Mach. Learn., 1993)

Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the mesozoic era. - Jerzy Jurka; Ewa Zietkiewicz; Damian Labuda (Nucleic Acids Res., 1995)

Censor - a Program for Identification and Elimination of Repetitive Elements From DNA Sequences. - Jerzy Jurka; Paul Klonowski; Vadim Dagman; Paul Pelton (Comput. Chem., 1996)

HERVd: the Human Endogenous RetroViruses Database: update. - Jan Paces; Adam Pavlícek; Radek Zika; Vladimir V. Kapitonov; Jerzy Jurka; Václav Paces (Nucleic Acids Res., 2004)

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. - Oleksiy Kohany; Andrew J. Gentles; Lukasz Hankus; Jerzy Jurka (BMC Bioinform., 2006)

VisualRepbase: an interface for the study of occurrences of transposable element families. - Sébastien Tempel; Matthew Jurka; Jerzy Jurka (BMC Bioinform., 2008)

Dfam: a database of repetitive DNA based on profile hidden Markov models. - Travis J. Wheeler; Jody Clements; Sean R. Eddy; Robert Hubley; Thomas A. Jones; Jerzy Jurka; Arian F. A. Smit; Robert D. Finn (Nucleic Acids Res., 2013)

The ctenophore genome and the evolutionary origins of neural systems Open. - Leonid L. Moroz; Kevin M. Kocot; Mathew R. Citarella; Sohn Dosung; Tigran P. Norekian; Inna S. Povolotskaya; Anastasia P. Grigorenko; Christopher Dailey; Eugene Berezikov; Katherine M. Buckley; Andrey A. Ptitsyn; Denis A. Reshetov; et al. (Nat., 2014)