A Model-Based Method for Retrospective Correction of Geometric Distortions in Diffusion-Weighted EPI. - Jesper L. R. Andersson; Stefan Skare (NeuroImage, 2002)

How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging. - Jesper L. R. Andersson; Stefan Skare; John Ashburner (NeuroImage, 2003)

Valid conjunction inference with the minimum statistic. - Thomas E. Nichols; Matthew Brett; Jesper L. R. Andersson; Tor D. Wager; Jean-Baptiste Poline (NeuroImage, 2005)

A Bayesian framework for global tractography. - Saâd Jbabdi; Mark W. Woolrich; Jesper L. R. Andersson; T. E. J. Behrens (NeuroImage, 2007)

Maximum a posteriori estimation of diffusion tensor parameters using a Rician noise model: Why, how and but. - Jesper L. R. Andersson (NeuroImage, 2008)

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. - Arno Klein; Jesper L. R. Andersson; Babak A. Ardekani; John Ashburner; Brian B. Avants; Ming-Chang Chiang; Gary E. Christensen; D. Louis Collins; James C. Gee; Pierre Hellier; Joo Hyun Song; Mark Jenkinson; et al. (NeuroImage, 2009)

Novel Fast Marching for Automated Segmentation of the Hippocampus (FMASH): Method and validation on clinical data. - Courtney A. Bishop; Mark Jenkinson; Jesper L. R. Andersson; Jérôme Declerck; Dorit Merhof (NeuroImage, 2011)

A probabilistic non-rigid registration framework using local noise estimates. - Ivor J. A. Simpson; Mark William Woolrich; Jesper L. R. Andersson; Adrian R. Groves; Julia A. Schnabel (ISBI, 2012)

Assessment of physiological noise modelling methods for functional imaging of the spinal cord. - Yazhuo Kong; Mark Jenkinson; Jesper L. R. Andersson; Irene Tracey; Jonathan C. W. Brooks (NeuroImage, 2012)

Probabilistic inference of regularisation in non-rigid registration. - Ivor J. A. Simpson; Julia A. Schnabel; Adrian R. Groves; Jesper L. R. Andersson; Mark William Woolrich (NeuroImage, 2012)

Multimodal Surface Matching: Fast and Generalisable Cortical Registration Using Discrete Optimisation. - Emma C. Robinson; Saâd Jbabdi; Jesper L. R. Andersson; Stephen M. Smith 001; Matthew F. Glasser; David C. Van Essen; Gregory C. Burgess; Michael P. Harms; Deanna M. Barch; Mark Jenkinson (IPMI, 2013)

The minimal preprocessing pipelines for the Human Connectome Project. - Matthew F. Glasser; Stamatios N. Sotiropoulos; J. Anthony Wilson; Timothy S. Coalson; Bruce Fischl; Jesper L. R. Andersson; Junqian Xu; Saâd Jbabdi; Matthew A. Webster; Jonathan R. Polimeni; David C. Van Essen; Mark Jenkinson (NeuroImage, 2013)

Improving alignment in Tract-based spatial statistics: Evaluation and optimization of image registration. - Marius de Groot; Meike W. Vernooij; Stefan Klein 001; Mohammad Arfan Ikram; Frans M. Vos; Stephen M. Smith 001; Wiro J. Niessen; Jesper L. R. Andersson (NeuroImage, 2013)

Resting-state fMRI in the Human Connectome Project. - Stephen M. Smith 001; Christian F. Beckmann; Jesper L. R. Andersson; Edward J. Auerbach; Janine D. Bijsterbosch; Gwenaëlle Douaud; Eugene P. Duff; David A. Feinberg; Ludovica Griffanti; Michael P. Harms; Michael Kelly; Timothy O. Laumann; et al. (NeuroImage, 2013)

Advances in diffusion MRI acquisition and processing in the Human Connectome Project. - Stamatios N. Sotiropoulos; Saâd Jbabdi; Junqian Xu; Jesper L. R. Andersson; Steen Moeller; Edward J. Auerbach; Matthew F. Glasser; Moisés Hernández; Guillermo Sapiro; Mark Jenkinson; David A. Feinberg; Essa Yacoub; et al. (NeuroImage, 2013)

Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project. - Kâmil Ugurbil; Junqian Xu; Edward J. Auerbach; Steen Moeller; An T. Vu; Julio Martin Duarte-Carvajalino; Christophe Lenglet; Xiaoping Wu; Sebastian Schmitter; Pierre-François van de Moortele; John P. Strupp; Guillermo Sapiro; et al. (NeuroImage, 2013)

Ensemble Learning Incorporating Uncertain Registration. - Ivor J. A. Simpson; Mark William Woolrich; Jesper L. R. Andersson; Adrian R. Groves; Julia A. Schnabel (IEEE Trans. Medical Imaging, 2013)

RubiX: Combining Spatial Resolutions for Bayesian Inference of Crossing Fibers in Diffusion MRI. - Stamatios N. Sotiropoulos; Saâd Jbabdi; Jesper L. R. Andersson; Mark William Woolrich; Kâmil Ugurbil; Timothy Edward John Behrens (IEEE Trans. Medical Imaging, 2013)

MSM: A new flexible framework for Multimodal Surface Matching. - Emma C. Robinson; Saâd Jbabdi; Matthew F. Glasser; Jesper L. R. Andersson; Gregory C. Burgess; Michael P. Harms; Stephen M. Smith 001; David C. Van Essen; Mark Jenkinson (NeuroImage, 2014)

Probabilistic non-linear registration with spatially adaptive regularisation. - Ivor J. A. Simpson; Manuel Jorge Cardoso; Marc Modat; David M. Cash; Mark W. Woolrich; Jesper L. R. Andersson; Julia A. Schnabel; Sébastien Ourselin (Medical Image Anal., 2015)

Non-parametric representation and prediction of single- and multi-shell diffusion-weighted MRI data using Gaussian processes. - Jesper L. R. Andersson; Stamatios N. Sotiropoulos (NeuroImage, 2015)

Heritability of fractional anisotropy in human white matter: A comparison of Human Connectome Project and ENIGMA-DTI data. - Peter V. Kochunov; Neda Jahanshad; Daniel S. Marcus; Anderson M. Winkler; Emma Sprooten; Thomas E. Nichols; Susan N. Wright; L. Elliot Hong; Binish Patel; Timothy Behrens; Saâd Jbabdi; Jesper L. R. Andersson; et al. (NeuroImage, 2015)

High resolution whole brain diffusion imaging at 7 T for the Human Connectome Project. - An T. Vu; Edward J. Auerbach; Christophe Lenglet; Steen Moeller; Stamatios N. Sotiropoulos; Saâd Jbabdi; Jesper L. R. Andersson; Essa Yacoub; Kâmil Ugurbil (NeuroImage, 2015)

A multi-modal parcellation of human cerebral cortex. - Matthew F. Glasser; Timothy S. Coalson; Emma C. Robinson; Carl D. Hacker; John W. Harwell; Essa Yacoub; Kâmil Ugurbil; Jesper L. R. Andersson; Christian F. Beckmann; Mark Jenkinson; Stephen M. Smith 001; David C. Van Essen (Nat., 2016)

Incorporating outlier detection and replacement into a non-parametric framework for movement and distortion correction of diffusion MR images. - Jesper L. R. Andersson; Mark S. Graham; Eniko Zsoldos; Stamatios N. Sotiropoulos (NeuroImage, 2016)

An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging. - Jesper L. R. Andersson; Stamatios N. Sotiropoulos (NeuroImage, 2016)

Fusion in diffusion MRI for improved fibre orientation estimation: An application to the 3T and 7T data of the Human Connectome Project. - Stamatios N. Sotiropoulos; Moisés Hernández-Fernández; An T. Vu; Jesper L. R. Andersson; Steen Moeller; Essa Yacoub; Christophe Lenglet; Kâmil Ugurbil; Timothy Edward John Behrens; Saâd Jbabdi (NeuroImage, 2016)

Towards a comprehensive framework for movement and distortion correction of diffusion MR images: Within volume movement. - Jesper L. R. Andersson; Mark S. Graham; Ivana Drobnjak; Hui Zhang 005; Nicola Filippini; Matteo Bastiani (NeuroImage, 2017)

Investigating resting-state functional connectivity in the cervical spinal cord at 3 T. - Falk Eippert; Yazhuo Kong; Anderson M. Winkler; Jesper L. R. Andersson; Jürgen Finsterbusch; Christian Büchel; Jonathan C. W. Brooks; Irene Tracey (NeuroImage, 2017)

Image processing and Quality Control for the first 10, 000 brain imaging datasets from UK Biobank. - Fidel Alfaro-Almagro; Mark Jenkinson; Neal K. Bangerter; Jesper L. R. Andersson; Ludovica Griffanti; Gwenaëlle Douaud; Stamatios N. Sotiropoulos; Saâd Jbabdi; Moisés Hernández-Fernández; Emmanuel Vallée; Diego Vidaurre; Matthew A. Webster; et al. (NeuroImage, 2018)

Susceptibility-induced distortion that varies due to motion: Correction in diffusion MR without acquiring additional data. - Jesper L. R. Andersson; Mark S. Graham; Ivana Drobnjak; Hui Zhang 005; Jon Campbell (NeuroImage, 2018)

Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project. - Matteo Bastiani; Jesper L. R. Andersson; Lucilio Cordero-Grande; Maria Murgasova; Jana Hutter; Anthony N. Price; Antonios Makropoulos; Sean P. Fitzgibbon; Emer J. Hughes; Daniel Rueckert; Suresh Victor; Mary A. Rutherford; et al. (NeuroImage, 2019)

Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction. - Matteo Bastiani; Michiel Cottaar; Sean P. Fitzgibbon; Sana Suri; Fidel Alfaro-Almagro; Stamatios N. Sotiropoulos; Saâd Jbabdi; Jesper L. R. Andersson (NeuroImage, 2019)

Optimising neonatal fMRI data analysis: Design and validation of an extended dHCP preprocessing pipeline to characterise noxious-evoked brain activity in infants. - Luke Baxter; Sean P. Fitzgibbon; Fiona Moultrie; Sezgi Goksan; Mark Jenkinson; Stephen M. Smith 001; Jesper L. R. Andersson; Eugene P. Duff; Rebeccah Slater (NeuroImage, 2019)

Incorporating non-linear alignment and multi-compartmental modeling for improved human optic nerve diffusion imaging. - Joo-won Kim; Jesper L. R. Andersson; Alan C. Seifert; Peng Sun; Sheng-Kwei Song; Courtney Dula; Robert T. Naismith; Junqian Xu (NeuroImage, 2019)

Multimodal MRI Template Creation in the Ring-Tailed Lemur and Rhesus Macaque. - Frederik J. Lange; Stephen M. Smith 001; Mads F. Bertelsen; Alexandre A. Khrapitchev; Paul R. Manger; Rogier B. Mars; Jesper L. R. Andersson (WBIR, 2020)

A Symmetric Prior for the Regularisation of Elastic Deformations: Improved anatomical plausibility in nonlinear image registration. - Frederik J. Lange; John Ashburner; Stephen M. Smith 001; Jesper L. R. Andersson (NeuroImage, 2020)

Non-negative data-driven mapping of structural connections with application to the neonatal brain. - Elinor Thompson; Ali Reza Mohammadi-Nejad; Emma C. Robinson; Jesper L. R. Andersson; Saâd Jbabdi; Matthew F. Glasser; Matteo Bastiani; Stamatios N. Sotiropoulos (NeuroImage, 2020)

Confound modelling in UK Biobank brain imaging. - Fidel Alfaro-Almagro; Paul McCarthy; Soroosh Afyouni; Jesper L. R. Andersson; Matteo Bastiani; Karla L. Miller; Thomas E. Nichols; Stephen M. Smith 001 (NeuroImage, 2021)

The Human Connectome Project: A retrospective. - Jennifer Stine Elam; Matthew F. Glasser; Michael P. Harms; Stamatios N. Sotiropoulos; Jesper L. R. Andersson; Gregory C. Burgess; Sandra W. Curtiss; Robert Oostenveld; Linda J. Larson-Prior; Jan-Mathijs Schoffelen; Michael R. Hodge; Eileen A. Cler; et al. (NeuroImage, 2021)

Slice-direction geometric distortion evaluation and correction with reversed slice-select gradient acquisitions. - Anna I. Blazejewska; Thomas Witzel; Jesper L. R. Andersson; Lawrence L. Wald; Jonathan R. Polimeni (NeuroImage, 2022)