HMMGEP: clustering gene expression data using hidden Markov models. - Xinglai Ji; Yuan Yuan; Jesse Li-Ling; Yanda Li; Zhirong Sun (Bioinform., 2004)

PhenOMIM: An OMIM-based secondary database purported for phenotypic comparison. - Han J. W. van Triest; Danqi Chen 001; Xinglai Ji; Shouliang Qi; Jesse Li-Ling (EMBC, 2011)

OMIM data - standardized input and pair-wise comparison. - Han J. W. van Triest; Jianhua Li; Duanxi Cao; Shuhong Wang; Jingshu Zhang; Huiqi Xie; Yan Kang; Jesse Li-Ling (FSKD, 2012)

Pancreatic malformations as seen in congenital syndromes - Developmental perspective with an alternative view. - Jianhua Li; Yueyang Teng; Shouliang Qi; Dayu Xiao; Lisheng Xu; Yan Kang; Jesse Li-Ling (ICIA, 2016)

Mining Similarity-Aware Distinguishing Sequential Patterns from Biomedical Sequences. - Tinghai Pang; Lei Duan; Jesse Li-Ling; Guozhu Dong (DSC, 2017)

RADAR: Representation Learning across Disease Information Networks for Similar Disease Detection. - Ruiqi Qin 001; Lei Duan; Huiru Zheng; Jesse Li-Ling; Kaiwen Song; Xuan Lan (BIBM, 2018)

SCENARIO: Discovery of Similar Aspects for Gene Similarity Explanation from Gene Information Network. - Yidan Zhang; Lei Duan; Huiru Zheng; Jesse Li-Ling; Bin Hu; Ruiqi Qin 001; Chengxin He (BIBM, 2019)

DRAMA: Discovering Disease-related circRNA-miRNA-mRNA Axes from Disease-RNA Information Network. - Chengxin He; Lei Duan; Huiru Zheng; Jesse Li-Ling; Longhai Li (BIBM, 2020)

MISSION: Multimodal-Information-Aided Similar Disease Detection Based on Disease Information Network. - Wuli Xu; Lei Duan; Huiru Zheng; Jesse Li-Ling; Weipeng Jiang; Menglin Huang; Yidan Zhang (BIBM, 2020)

An Ontology-Independent Representation Learning for Similar Disease Detection Based on Multi-Layer Similarity Network. - Ruiqi Qin 001; Lei Duan; Huiru Zheng; Jesse Li-Ling; Kaiwen Song; Yidan Zhang (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Mining Similar Aspects for Gene Similarity Explanation Based on Gene Information Network. - Yidan Zhang; Lei Duan; Huiru Zheng; Jesse Li-Ling; Ruiqi Qin 001; Zihao Chen; Chengxin He; Tingting Wang 009 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

An Integrative Disease Information Network Approach to Similar Disease Detection. - Wuli Xu; Lei Duan; Huiru Zheng; Jesse Li-Ling; Weipeng Jiang; Yidan Zhang; Tingting Wang 009; Ruiqi Qin 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)