Network Inference in Molecular Biology - A Hands-on Framework - Jesse M. Lingeman; Dennis E. Shasha (Springer, 2012)

Rethinking Document Retrieval for Scientific Literature: A Learning to Rank Approach. - Jesse M. Lingeman; Hong Yu 001 (AMIA, 2015)

Learning to Rank Scientific Documents from the Crowd. - Jesse M. Lingeman; Hong Yu 001 (CoRR, 2016)

Detecting Opioid-Related Aberrant Behavior using Natural Language Processing. - Jesse M. Lingeman; Priscilla Wang; William Becker; Hong Yu 001 (AMIA, 2017)