Semi-automated Constraint-based Metabolic Model Generation. - Jesse R. Walsh; Julie A. Dickerson (BCB, 2013)

A computational platform to maintain and migrate manual functional annotations for BioCyc databases. - Jesse R. Walsh; Taner Z. Sen; Julie A. Dickerson (BMC Syst. Biol., 2014)

The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize. - Jesse R. Walsh; Mary L. Schaeffer; Peifen Zhang; Seung Yon Rhee; Julie A. Dickerson; Taner Z. Sen (BMC Syst. Biol., 2016)

MaizeGDB 2018: the maize multi-genome genetics and genomics database. - John L. Portwood II; Margaret Woodhouse; Ethalinda K. S. Cannon; Jack M. Gardiner; Lisa C. Harper; Mary L. Schaeffer; Jesse R. Walsh; Taner Z. Sen; Kyoung Tak Cho; David A. Schott; Bremen L. Braun; Miranda Dietze; et al. (Nucleic Acids Res., 2019)

A supervised learning method for classifying methylation disorders. - Jesse R. Walsh; Guangchao Sun; Jagadheshwar Balan; Jayson Hardcastle; Jason Vollenweider; Calvin Jerde; Kandelaria Rumilla; Christy Koellner; Alaa Koleilat; Linda Hasadsri; Benjamin Kipp; W. Garrett Jenkinson; et al. (BMC Bioinform., 2024)