PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data. - Thomas J. Sharpton; Samantha J. Riesenfeld; Steven W. Kembel; Joshua Ladau; James P. O'Dwyer; Jessica L. Green; Jonathan A. Eisen; Katherine S. Pollard (PLoS Comput. Biol., 2011)

Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance. - Steven W. Kembel; Martin Wu; Jonathan A. Eisen; Jessica L. Green (PLoS Comput. Biol., 2012)

Phylogenetic Diversity Theory Sheds Light on the Structure of Microbial Communities. - James P. O'Dwyer; Steven W. Kembel; Jessica L. Green (PLoS Comput. Biol., 2012)