Epigenetic domains found in mouse embryonic stem cells via a hidden Markov model. - Jessica L. Larson; Guo-Cheng Yuan (BMC Bioinform., 2010)

A hidden Markov model for detecting multi-gene chromatin domains. - Jessica L. Larson; Guo-Cheng Yuan (BMC Bioinform., 2010)

ReportingTools: an automated result processing and presentation toolkit for high-throughput genomic analyses. - Melanie A. Huntley; Jessica L. Larson; Christina Chaivorapol; Gabriel Becker; Michael Lawrence; Jason A. Hackney; Joshua S. Kaminker (Bioinform., 2013)

Moment based gene set tests. - Jessica L. Larson; Art B. Owen (BMC Bioinform., 2015)