Integrating Ripple Down Rules with Ontologies in an Oncology Domain. - Rodrigo Martínez-Béjar; Francisca Ibáñez-Cruz; Paul Compton; Jesualdo Tomás Fernández-Breis; Manuel De las Heras-González (AIME, 2001)

A Context-Driven Approach for Knowledge Acquisition: Application to a Leukaemia Domain. - Jesualdo Tomás Fernández-Breis; Rafael Valencia-García; Rodrigo Martínez-Béjar; Pascual Cantos-Gómez (CONTEXT, 2001)

Towards scott domains-based topological ontology models. - Jesualdo Tomás Fernández-Breis; Dagoberto Castellanos Nieves; Rafael Valencia-García; Pedro José Vivancos Vicente; Rodrigo Martínez-Béjar; Manuel De las Heras-González (FOIS, 2001)

A cooperative framework for integrating ontologies. - Jesualdo Tomás Fernández-Breis; Rodrigo Martínez-Béjar (Int. J. Hum. Comput. Stud., 2002)

An Approach for Ontology Building from Text Supported by NLP Techniques. - Rafael Valencia-García; Dagoberto Castellanos Nieves; Pedro José Vivancos Vicente; Jesualdo Tomás Fernández-Breis; Rodrigo Martínez-Béjar; Francisco García-Sánchez 001 (CAEPIA, 2003)

An approach for incremental knowledge acquisition from text. - Juana María Ruiz-Sánchez; Rafael Valencia-García; Jesualdo Tomás Fernández-Breis; Rodrigo Martínez-Béjar; Paul Compton (Expert Syst. Appl., 2003)

An ontological framework for representing and exploiting medical knowledge. - Francisco Jesús Torralba-Rodríguez; Jesualdo Tomás Fernández-Breis; Rafael Valencia-García; Juana María Ruiz-Sánchez; Rodrigo Martínez-Béjar; Juan Antonio Gómez-Rubí (Expert Syst. Appl., 2003)

An Approach for Multirelational Ontology Modelling. - Pedro José Vivancos Vicente; Rafael Valencia-García; Jesualdo Tomás Fernández-Breis; Rodrigo Martínez-Béjar; Fernando Martín-Rubio (PRICAI, 2004)

An incremental approach for discovering medical knowledge from texts. - Rafael Valencia-García; Juana María Ruiz-Sánchez; Pedro José Vivancos Vicente; Jesualdo Tomás Fernández-Breis; Rodrigo Martínez-Béjar (Expert Syst. Appl., 2004)

Cooperative Modelling Evaluated. - Ghassan Beydoun; Achim G. Hoffmann; Jesualdo Tomás Fernández-Breis; Rodrigo Martínez-Béjar; Rafael Valencia-García; Aybüke Aurum (Int. J. Cooperative Inf. Syst., 2005)

A Methodology for Extracting Ontological Knowledge from Spanish Documents. - Rafael Valencia-García; Dagoberto Castellanos Nieves; Jesualdo Tomás Fernández-Breis; Pedro José Vivancos Vicente (CICLing, 2006)

Using semantic technologies to promote interoperability between electronic healthcare records' information models. - Jesualdo Tomás Fernández-Breis; Pedro José Vivancos Vicente; Marcos Menárguez Tortosa; David Moner; José Alberto Maldonado; Rafael Valencia-García; Teddy G. Miranda-Mena (EMBC, 2006)

Archetype-Based Semantic Integration and Standardization of Clinical Data. - David Moner; José Alberto Maldonado; Diego Boscá; Jesualdo Tomás Fernández-Breis; Carlos Angulo; Pere Crespo; Pedro José Vivancos Vicente; Montserrat Robles (EMBC, 2006)

An Ontological Infrastructure for the Semantic Integration of Clinical Archetypes. - Jesualdo Tomás Fernández-Breis; Marcos Menárguez Tortosa; David Moner; Rafael Valencia-García; José Alberto Maldonado; Pedro José Vivancos Vicente; Teddy G. Miranda-Mena; Rodrigo Martínez-Béjar (PKAW, 2006)

Visual Knowledge Annotation and Management by Using Qualitative Spatial Information. - Pedro José Vivancos Vicente; Jesualdo Tomás Fernández-Breis; Rodrigo Martínez-Béjar; Rafael Valencia-García (PKAW, 2006)

An ontology-based intelligent system for recruitment. - Francisco García-Sánchez 001; Rodrigo Martínez-Béjar; Leonardo Contreras; Jesualdo Tomás Fernández-Breis; Dagoberto Castellanos Nieves (Expert Syst. Appl., 2006)

A knowledge-based approach to assign breast cancer treatments in oncology units. - Teddy G. Miranda-Mena; Sandra L. Benítez U.; José Luis Ochoa; Rodrigo Martínez-Béjar; Jesualdo Tomás Fernández-Breis; Juan Salinas (Expert Syst. Appl., 2006)

Framework for Clinical Data Standardization Based on Archetypes. - José Alberto Maldonado; David Moner; Diego Tomás; Carlos Angulo; Montserrat Robles; Jesualdo Tomás Fernández-Breis (MedInfo, 2007)

Populating Ontologies in the eTourism Domain. - Juana María Ruiz-Martínez; José Antonio Miñarro-Giménez; Laura Guillén-Cárceles; Dagoberto Castellanos Nieves; Rafael Valencia-García; Francisco García-Sánchez 001; Jesualdo Tomás Fernández-Breis; Rodrigo Martínez-Béjar (Web Intelligence/IAT Workshops, 2008)

Knowledge Technologies-Based Multi-Agent System for Semantic Web Services Environments. - Francisco García-Sánchez 001; Rodrigo Martínez-Béjar; Rafael Valencia-García; Jesualdo Tomás Fernández-Breis (ICAISC, 2008)

Accessing Touristic Knowledge Bases through a Natural Language Interface. - Juana María Ruiz-Martínez; Dagoberto Castellanos Nieves; Rafael Valencia-García; Jesualdo Tomás Fernández-Breis; Francisco García-Sánchez 001; Pedro José Vivancos Vicente; Juan Salvador Castejón-Garrido; Juan Bosco Camón-Herrero; Rodrigo Martínez-Béjar (PKAW, 2008)

Using Semantic Web Technologies for the Assessment of Open Questions. - Dagoberto Castellanos Nieves; Jesualdo Tomás Fernández-Breis; Rafael Valencia-García; Carlos Cruz 001; Maria Paz Prendes-Espinosa; Rodrigo Martínez-Béjar (PRICAI, 2008)

An Ontology-Based Framework for Modelling Security Requirements. - Joaquín Lasheras; Rafael Valencia-García; Jesualdo Tomás Fernández-Breis; José Ambrosio Toval Álvarez (WOSIS, 2008)

An Integrated Ontological Knowledge Base About Orthologous Genes and Proteins. - José Antonio Miñarro-Giménez; Marisa Madrid; Jesualdo Tomás Fernández-Breis (SWAT4LS, 2008)

A knowledge acquisition methodology to ontology construction for information retrieval from medical documents. - Rafael Valencia-García; Jesualdo Tomás Fernández-Breis; Juana María Ruiz-Martínez; Francisco García-Sánchez 001; Rodrigo Martínez-Béjar (Expert Syst. J. Knowl. Eng., 2008)

Combining Semantic Web technologies with Multi-Agent Systems for integrated access to biological resources. - Francisco García-Sánchez 001; Jesualdo Tomás Fernández-Breis; Rafael Valencia-García; Juan Miguel Gómez 001; Rodrigo Martínez-Béjar (J. Biomed. Informatics, 2008)

Towards Adaptable Semantic Grid Services Execution Environments. - Ignacio Sanchez-Peral; Francisco García-Sánchez 001; Rafael Valencia-García; Jesualdo Tomás Fernández-Breis; Rodrigo Martínez-Béjar (ICNS, 2009)

Towards ISO 13606 and openEHR Archetype-Based Semantic Interoperability. - Catalina Martínez-Costa; Marcos Menárguez Tortosa; Jesualdo Tomás Fernández-Breis (MIE, 2009)

Bridging the Gap between the Logical and the Physical Worlds. - Francisco García-Sánchez 001; Renato Vidoni; Rodrigo Martínez-Béjar; Alessandro Gasparetto; Rafael Valencia-García; Jesualdo Tomás Fernández-Breis (PAAMS, 2009)

Semantic integration and exploitation of orthology information and genetic disorders. - José Antonio Miñarro-Giménez; Marisa Madrid; Jesualdo Tomás Fernández-Breis (SWAT4LS, 2009)

Modelling Reusable Security Requirements based on an Ontology Framework. - Joaquín Lasheras; Rafael Valencia-García; Jesualdo Tomás Fernández-Breis; Ambrosio Toval (J. Res. Pract. Inf. Technol., 2009)

OGO: an ontological approach for integrating knowledge about orthology. - José Antonio Miñarro-Giménez; Marisa Madrid; Jesualdo Tomás Fernández-Breis (BMC Bioinform., 2009)

An application of intelligent techniques and semantic web technologies in e-learning environments. - Anatoly Jasonovich Gladun; Julia Vitalijevna Rogushina; Francisco García-Sánchez 001; Rodrigo Martínez-Béjar; Jesualdo Tomás Fernández-Breis (Expert Syst. Appl., 2009)

An ontology, intelligent agent-based framework for the provision of semantic web services. - Francisco García-Sánchez 001; Rafael Valencia-García; Rodrigo Martínez-Béjar; Jesualdo Tomás Fernández-Breis (Expert Syst. Appl., 2009)

LinkEHR-Ed: A multi-reference model archetype editor based on formal semantics. - José Alberto Maldonado; David Moner; Diego Boscá; Jesualdo Tomás Fernández-Breis; Carlos Angulo; Montserrat Robles (Int. J. Medical Informatics, 2009)

Measuring individual learning performance in group work from a knowledge integration perspective. - Jesualdo Tomás Fernández-Breis; Dagoberto Castellanos Nieves; Rafael Valencia-García (Inf. Sci., 2009)

A model-driven approach for representing clinical archetypes for Semantic Web environments. - Catalina Martínez-Costa; Marcos Menárguez Tortosa; Jesualdo Tomás Fernández-Breis; José Alberto Maldonado (J. Biomed. Informatics, 2009)

Generation of Useful Semantic Feedback for Students and Teachers. - María del Mar Sánchez-Vera; Francisco Frutos-Morales; M. D. Castellanos-Nieves; Maria Paz Prendes-Espinosa; Jesualdo Tomás Fernández-Breis; C. Cruz-Corona (CSEDU (1), 2010)

ResearchEHR: Use of semantic web technologies and archetypes for the description of EHRs. - Montserrat Robles; Jesualdo Tomás Fernández-Breis; José Alberto Maldonado; David Moner; Catalina Martínez-Costa; Diego Boscá; Marcos Menárguez Tortosa (EFMI-STC, 2010)

Enriching the Gene Ontology via the Dissection of Labels Using the Ontology Pre-processor Language. - Jesualdo Tomás Fernández-Breis; Luigi Iannone; Ignazio Palmisano; Alan L. Rector; Robert Stevens 001 (EKAW, 2010)

OWL-based Reasoning Methods for Validating Archetyped Clinical Knowledge. - Marcos Menárguez Tortosa; Jesualdo Tomás Fernández-Breis (EKAW (Posters and Demos), 2010)

A Semantic Query Interface for the OGO Platform. - José Antonio Miñarro-Giménez; Mikel Egaña Aranguren; Francisco García-Sánchez 001; Jesualdo Tomás Fernández-Breis (ITBAM, 2010)

Flexible Semantic Querying of Clinical Archetypes. - Catalina Martínez-Costa; José Antonio Miñarro-Giménez; Marcos Menárguez Tortosa; Rafael Valencia-García; Jesualdo Tomás Fernández-Breis (KES (1), 2010)

An incremental knowledge acquisition-based system for supporting decisions in biomedical domains. - Francisco Jesús Torralba-Rodríguez; Vicente Bixquert Montagud; Jesualdo Tomás Fernández-Breis; Rodrigo Martínez-Béjar (Comput. Methods Programs Biomed., 2010)

An incremental knowledge acquisition-based system for critical domains. - Francisco Jesús Torralba-Rodríguez; Jesualdo Tomás Fernández-Breis; Rodrigo Martínez-Béjar; Vicente Bixquert Montagud (Expert Syst. Appl., 2010)

Exploitation of social semantic technology for software development team configuration. - Rafael Valencia-García; Francisco García-Sánchez 001; Dagoberto Castellanos Nieves; Jesualdo Tomás Fernández-Breis; Ambrosio Toval (IET Softw., 2010)

An approach for the semantic interoperability of ISO EN 13606 and OpenEHR archetypes. - Catalina Martínez-Costa; Marcos Menárguez Tortosa; Jesualdo Tomás Fernández-Breis (J. Biomed. Informatics, 2010)

Enabling Intelligent Service Discovery with GGODO. - Mariano Rico; Francisco García-Sánchez 001; Juan Miguel Gómez 001; Rafael Valencia-García; Jesualdo Tomás Fernández-Breis (J. Inf. Sci. Eng., 2010)

Using ontologies for supporting genomic sequence annotation projects. - María Del Carmen Legaz-García; José Antonio Miñarro-Giménez; Marisa Madrid; Santiago Torres Martínez; Jesualdo Tomás Fernández-Breis (BCB, 2011)

Ontology-Driven Method for Integrating Biomedical Repositories. - José Antonio Miñarro-Giménez; Jesualdo Tomás Fernández-Breis (CAEPIA, 2011)

Exploitation of Translational Bioinformatics for Decision-Making on Cancer Treatments. - José Antonio Miñarro-Giménez; Teddy G. Miranda-Mena; Rodrigo Martínez-Béjar; Jesualdo Tomás Fernández-Breis (ITBAM, 2011)

Validation of the openEHR Archetype Library by using OWL Reasoning. - Marcos Menárguez Tortosa; Jesualdo Tomás Fernández-Breis (MIE, 2011)

OPPL-Galaxy: enhancing ontology exploitation in galaxy with OPPL. - Mikel Egaña Aranguren; Jesualdo Tomás Fernández-Breis; Erick Antezana (SWAT4LS, 2011)

A Social-Empowered Platform for Gathering Semantic Information. - Angel Esteban-Gil; Francisco García-Sánchez 001; Rafael Valencia-García; Jesualdo Tomás Fernández-Breis (WSKS, 2011)

Recommendation of Personalized Learning Contents Supported by Semantic Web Technologies. - Jesualdo Tomás Fernández-Breis; Francisco Frutos-Morales; Angel Esteban-Gil; Dagoberto Castellanos Nieves; Rafael Valencia-García; Francisco García-Sánchez 001; María del Mar Sánchez-Vera (WSKS, 2011)

OQuaRE: A SQuaRE-based Approach for Evaluating the Quality of Ontologies. - Astrid Duque-Ramos; Jesualdo Tomás Fernández-Breis; Robert Stevens 001; Nathalie Aussenac-Gilles (J. Res. Pract. Inf. Technol., 2011)

Financial news semantic search engine. - Eduardo Lupiani-Ruiz; Ignacio García-Manotas; Rafael Valencia-García; Francisco García-Sánchez 001; Dagoberto Castellanos Nieves; Jesualdo Tomás Fernández-Breis; Juan Bosco Camón-Herrero (Expert Syst. Appl., 2011)

Ontology learning from biomedical natural language documents using UMLS. - Juana María Ruiz-Martínez; Rafael Valencia-García; Jesualdo Tomás Fernández-Breis; Francisco García-Sánchez 001; Rodrigo Martínez-Béjar (Expert Syst. Appl., 2011)

Semantic Web Technologies for supporting learning assessment. - Dagoberto Castellanos Nieves; Jesualdo Tomás Fernández-Breis; Rafael Valencia-García; Rodrigo Martínez-Béjar; Miguela Iniesta-Moreno (Inf. Sci., 2011)

Clinical data interoperability based on archetype transformation. - Catalina Martínez-Costa; Marcos Menárguez Tortosa; Jesualdo Tomás Fernández-Breis (J. Biomed. Informatics, 2011)

Semantic integration of information about orthologs and diseases: The OGO system. - José Antonio Miñarro-Giménez; Mikel Egaña Aranguren; Rodrigo Martínez-Béjar; Jesualdo Tomás Fernández-Breis; Marisa Madrid (J. Biomed. Informatics, 2011)

OWLPath: An OWL Ontology-Guided Query Editor. - Rafael Valencia-García; Francisco García-Sánchez 001; Dagoberto Castellanos Nieves; Jesualdo Tomás Fernández-Breis (IEEE Trans. Syst. Man Cybern. Part A, 2011)

Extraction and analysis of the structure of labels in biomedical ontologies. - Manuel Quesada-Martínez; Jesualdo Tomás Fernández-Breis; Robert Stevens 001 (MIX-HS, 2012)

Exploitation of ontologies for the management of clinical archetypes in ArchMS. - María Del Carmen Legaz-García; Catalina Martínez-Costa; Marcos Menárguez Tortosa; Jesualdo Tomás Fernández-Breis (ICBO, 2012)

NCBO-Galaxy: bridging the BioPortal web services and the Galaxy platform. - José Antonio Miñarro-Giménez; Mikel Egaña Aranguren; Jesualdo Tomás Fernández-Breis; Erick Antezana (ICBO, 2012)

Informal learning through expertise mining in the social web. - Rafael Valencia-García; Francisco García-Sánchez 001; Cristina Casado-Lumbreras; Dagoberto Castellanos Nieves; Jesualdo Tomás Fernández-Breis (Behav. Inf. Technol., 2012)

SocialBROKER: A collaborative social space for gathering semantically-enhanced financial information. - Angel Esteban-Gil; Francisco García-Sánchez 001; Rafael Valencia-García; Jesualdo Tomás Fernández-Breis (Expert Syst. Appl., 2012)

A semantic platform for the management of the educative curriculum. - Jesualdo Tomás Fernández-Breis; Dagoberto Castellanos Nieves; José Hernández-Franco; Celia Soler-Segovia; María del Carmen Robles-Redondo; Rodrigo González-Martínez; Maria Paz Prendes-Espinosa (Expert Syst. Appl., 2012)

Using the ResearchEHR platform to facilitate the practical application of the EHR standards. - José Alberto Maldonado; Catalina Martínez-Costa; David Moner; Marcos Menárguez Tortosa; Diego Boscá; José Antonio Miñarro-Giménez; Jesualdo Tomás Fernández-Breis; Montserrat Robles (J. Biomed. Informatics, 2012)

A Generative Tool for Building Health Applications Driven by ISO 13606 Archetypes. - Marcos Menárguez Tortosa; Catalina Martínez-Costa; Jesualdo Tomás Fernández-Breis (J. Medical Syst., 2012)

Semantic Web technologies for generating feedback in online assessment environments. - María del Mar Sánchez-Vera; Jesualdo Tomás Fernández-Breis; Dagoberto Castellanos Nieves; Francisco Frutos-Morales; Maria Paz Prendes-Espinosa (Knowl. Based Syst., 2012)

Lexical Characterization and Analysis of the BioPortal Ontologies. - Manuel Quesada-Martínez; Jesualdo Tomás Fernández-Breis; Robert Stevens 001 (AIME, 2013)

Searching research papers using clustering and text mining. - E. Alan Calvillo; Alejandro Padilla; Jaime Muñoz Arteaga; Julio Ponce; Jesualdo Tomás Fernández-Breis (CONIELECOMP, 2013)

Analysis and Classification of Bio-ontologies by the Structure of their Labels. - Manuel Quesada-Martínez; Jesualdo Tomás Fernández-Breis; Robert Stevens 001 (IWBBIO, 2013)

Isosemantic Rendering of Clinical Information Using Formal Ontologies and RDF. - Catalina Martínez-Costa; Diego Boscá; María Del Carmen Legaz-García; Cui Tao; Jesualdo Tomás Fernández-Breis; Stefan Schulz 001; Christopher G. Chute (MedInfo, 2013)

OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows. - Mikel Egaña Aranguren; Jesualdo Tomás Fernández-Breis; Erick Antezana; Chris Mungall; Alejandro Rodríguez González; Mark D. Wilkinson (J. Biomed. Semant., 2013)

Evaluation of the OQuaRE framework for ontology quality. - Astrid Duque-Ramos; Jesualdo Tomás Fernández-Breis; Miguela Iniesta-Moreno; Michel Dumontier; Mikel Egaña Aranguren; Stefan Schulz 001; Nathalie Aussenac-Gilles; Robert Stevens 001 (Expert Syst. Appl., 2013)

Biomedical information through the implementation of social media environments. - Alejandro Rodríguez González; Miguel Angel Mayer; Jesualdo Tomás Fernández-Breis (J. Biomed. Informatics, 2013)

OWL-based reasoning methods for validating archetypes. - Marcos Menárguez Tortosa; Jesualdo Tomás Fernández-Breis (J. Biomed. Informatics, 2013)

Ontology-based infrastructure for a meaningful EHR representation and use. - Catalina Martínez-Costa; María Del Carmen Legaz-García; Stefan Schulz 001; Jesualdo Tomás Fernández-Breis (BHI, 2014)

A Quality Assurance Workflow for Ontologies Based on Semantic Regularities. - Eleni Mikroyannidi; Manuel Quesada-Martínez; Dmitry Tsarkov; Jesualdo Tomás Fernández-Breis; Robert Stevens 001; Ignazio Palmisano (EKAW, 2014)

OntoEnrich: A Platform for the Lexical Analysis of Ontologies. - Manuel Quesada-Martínez; Jesualdo Tomás Fernández-Breis; Robert Stevens 001; Nathalie Aussenac-Gilles (EKAW (Satellite Events), 2014)

Ontology patterns-based transformation of clinical information. - María Del Carmen Legaz-García; Catalina Martínez-Costa; José Antonio Miñarro-Giménez; Jesualdo Tomás Fernández-Breis; Stefan Schulz 001; Marcos Menárguez Tortosa (MIE, 2014)

Analysis and Visualization of Disease Courses in a Semantic Enabled Cancer Registry. - Angel Esteban-Gil; Jesualdo Tomás Fernández-Breis; Martin Boeker (SWAT4LS, 2014)

Special issue on Linked Data for Health Care and the Life Sciences. - Mikel Egaña Aranguren; Jesualdo Tomás Fernández-Breis; Michel Dumontier (Semantic Web, 2014)

Translational research combining orthologous genes and human diseases with the OGOLOD dataset. - José Antonio Miñarro-Giménez; Mikel Egaña Aranguren; Boris Villazón-Terrazas; Jesualdo Tomás Fernández-Breis (Semantic Web, 2014)

Analysis of the evolution of ontologies using OQuaRE: application to EDAM. - Manuel Quesada-Martínez; Astrid Duque-Ramos; Jesualdo Tomás Fernández-Breis (ICBO, 2015)

Lessons learned in the generation of biomedical research datasets using Semantic Open Data technologies. - María Del Carmen Legaz-García; José Antonio Miñarro-Giménez; Marcos Menárguez Tortosa; Jesualdo Tomás Fernández-Breis (MIE, 2015)

Performance Evaluation of Human Resources in a Hospital. - Angel Esteban-Gil; Jesualdo Tomás Fernández-Breis; Clara Miranda-Lopez (SWAT4LS, 2015)

Towards the Semantic Standardization of Orthology Content. - Jesualdo Tomás Fernández-Breis; María Del Carmen Legaz-García; Hirokazu Chiba; Ikuo Uchiyama (SWAT4LS, 2015)

Approaching the axiomatic enrichment of the Gene Ontology from a lexical perspective. - Manuel Quesada-Martínez; Eleni Mikroyannidi; Jesualdo Tomás Fernández-Breis; Robert Stevens 001 (Artif. Intell. Medicine, 2015)

Transformation of standardized clinical models based on OWL technologies: from CEM to OpenEHR archetypes. - María Del Carmen Legaz-García; Marcos Menárguez Tortosa; Jesualdo Tomás Fernández-Breis; Christopher G. Chute; Cui Tao (J. Am. Medical Informatics Assoc., 2015)

A platform for exploration into chaining of web services for clinical data transformation and reasoning. - José Alberto Maldonado; Mar Marcos; Jesualdo Tomás Fernández-Breis; Estibaliz Parcero; Diego Boscá; María Del Carmen Legaz-García; Begoña Martínez-Salvador; Montserrat Robles (AMIA, 2016)

Angel: Towards a Multi-level Method for the Analysis of Variants in Individual Genomes. - Ginés Almagro-Hernández; Francisco García-Sánchez 001; María Eugenia de la Morena-Barrio; Javier Corral; Jesualdo Tomás Fernández-Breis (IWBBIO, 2016)

Can Existing Biomedical Ontologies Be More Useful for EHR and CDS? - Jesualdo Tomás Fernández-Breis; Manuel Quesada-Martínez; Astrid Duque-Ramos (KR4HC/ProHealth@HEC, 2016)

Publishing Biomedical Predication Repository About MeSH Co-Occurrences in MEDLINE. - José Antonio Miñarro-Giménez; Manuel Quesada-Martínez; Jesualdo Tomás Fernández-Breis; Stefan Schulz 001 (MIE, 2016)

Suggesting Missing Relations in Biomedical Ontologies Based on Lexical Regularities. - Manuel Quesada-Martínez; Jesualdo Tomás Fernández-Breis; Daniel Karlsson (MIE, 2016)

Case Report Form based on semantic Web technologies. - Angel Esteban-Gil; Jesualdo Tomás Fernández-Breis (SWAT4LS, 2016)

Easy-to-use Semantic Search of Pharmacological Data. - Angel Esteban-Gil; Jesualdo Tomás Fernández-Breis (SWAT4LS, 2016)

Supporting the analysis of ontology evolution processes through the combination of static and dynamic scaling functions in OQuaRE. - Astrid Duque-Ramos; Manuel Quesada-Martínez; Miguela Iniesta-Moreno; Jesualdo Tomás Fernández-Breis; Robert Stevens 001 (J. Biomed. Semant., 2016)

The Orthology Ontology: development and applications. - Jesualdo Tomás Fernández-Breis; Hirokazu Chiba; María Del Carmen Legaz-García; Ikuo Uchiyama (J. Biomed. Semant., 2016)

Generation of open biomedical datasets through ontology-driven transformation and integration processes. - María Del Carmen Legaz-García; José Antonio Miñarro-Giménez; Marcos Menárguez Tortosa; Jesualdo Tomás Fernández-Breis (J. Biomed. Semant., 2016)

A semantic web based framework for the interoperability and exploitation of clinical models and EHR data. - María Del Carmen Legaz-García; Catalina Martínez-Costa; Marcos Menárguez Tortosa; Jesualdo Tomás Fernández-Breis (Knowl. Based Syst., 2016)

Studying the Reuse of Content in Biomedical Ontologies: An Axiom-Based Approach. - Manuel Quesada-Martínez; Jesualdo Tomás Fernández-Breis (AIME, 2017)

Deciphering Gene Sets Annotations with Ontology Based Visualization. - Aarón Ayllón-Benítez; Patricia Thébault; Jesualdo Tomás Fernández-Breis; Manuel Quesada-Martínez; Fleur Mougin; Romain Bourqui (IV, 2017)

Optimizing Semantic Data Transformation Using High Performance Computing Techniques. - José Antonio Bernabé-Díaz; María Del Carmen Legaz-García; José Manuel García Carrasco; Jesualdo Tomás Fernández-Breis (SWAT4LS, 2017)

Leveraging Logical Rules for Efficacious Representation of Large Orthology Datasets. - Tarcisio M. Farias; Hirokazu Chiba; Jesualdo Tomás Fernández-Breis (SWAT4LS, 2017)

Analysis and visualization of disease courses in a semantically-enabled cancer registry. - Angel Esteban-Gil; Jesualdo Tomás Fernández-Breis; Martin Boeker (J. Biomed. Semant., 2017)

OntoEnrich: Una plataforma para el análisis léxico de ontologías orientado a su enriquecimiento axiomático. - Manuel Quesada-Martínez; Dagoberto Castellanos Nieves; Jesualdo Tomás Fernández-Breis (Proces. del Leng. Natural, 2017)

Towards the semantic enrichment of Computer Interpretable Guidelines: a method for the identification of relevant ontological terms. - Manuel Quesada-Martínez; Mar Marcos; Francisco Abad Navarro; Begoña Martínez-Salvador; Jesualdo Tomás Fernández-Breis (AMIA, 2018)

Application of High Performance Computing Techniques to the Semantic Data Transformation. - José Antonio Bernabé-Díaz; María Del Carmen Legaz-García; José M. García 001; Jesualdo Tomás Fernández-Breis (WorldCIST (1), 2018)

Gearing up to handle the mosaic nature of life in the quest for orthologs. - Kristoffer Forslund; Cécile Pereira; Salvador Capella-Gutiérrez; Alan W. Sousa da Silva; Adrian M. Altenhoff; Jaime Huerta-Cepas; Matthieu Muffato; Mateus Patricio; Klaas Vandepoele; Ingo Ebersberger; Judith A. Blake; Jesualdo Tomás Fernández-Breis; et al. (Bioinform., 2018)

Lost in translation: bioinformatic analysis of variations affecting the translation initiation codon in the human genome. - Francisco Abad Navarro; María Eugenia de la Morena-Barrio; Jesualdo Tomás Fernández-Breis; Javier Corral (Bioinform., 2018)

From lexical regularities to axiomatic patterns for the quality assurance of biomedical terminologies and ontologies. - Philip van Damme; Manuel Quesada-Martínez; Ronald Cornet; Jesualdo Tomás Fernández-Breis (J. Biomed. Informatics, 2018)

Getting answers from semantic repositories: a keywords-based approach. - Francisco Abad Navarro; Jesualdo Tomás Fernández-Breis (Proces. del Leng. Natural, 2018)

Snomed2Vec: Representation of SNOMED CT Terms with Word2Vec. - Ignacio Martinez Soriano; Juan Luis Castro Peña; Jesualdo Tomás Fernández-Breis; Ignacio San Román; Adrian Alonso Barriuso; David Guevara Baraza (CBMS, 2019)

An Example of Multimodal Biological Knowledge Representation. - José Antonio Vera-Ramos; Belén Juanes-Cortés; Jesualdo Tomás Fernández-Breis; Pascale Gaudet; Martin Kuiper; Astrid Lægreid; Colin Logie; María del Mar Roldán García; Stefan Schulz 001 (JOWO, 2019)

Towards Distributed Learning in Internet of Things. Air Quality Monitoring Use Case. - Lazrak Noussair; Jesualdo Tomás Fernández-Breis; Jihad Zahir; Hajar Mousannif (MEDI Workshops, 2019)

Efficient, semantics-rich transformation and integration of large datasets. - José Antonio Bernabé-Díaz; María Del Carmen Legaz-García; José M. García 001; Jesualdo Tomás Fernández-Breis (Expert Syst. Appl., 2019)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. - Toshiaki Katayama; Shuichi Kawashima; Gos Micklem; Shin Kawano; Jin-Dong Kim; Simon Kocbek; Shinobu Okamoto; Yue Wang 040; Hongyan Wu; Atsuko Yamaguchi; Yasunori Yamamoto; Erick Antezana; et al. (F1000Research, 2019)

Discovering the Most Characteristic Motif from a Set of Peak Sequences. - Ginés Almagro-Hernández; Jesualdo Tomás Fernández-Breis (IWBBIO, 2020)

An Automated Process for the Repository-Based Analysis of Ontology Structural Metrics. - José Antonio Bernabé-Díaz; Manuel Franco; Juana-María Vivo-Molina; Manuel Quesada-Martínez; Astrid Duque-Ramos; Jesualdo Tomás Fernández-Breis (IEEE Access, 2020)

Evaluation of ontology structural metrics based on public repository data. - Manuel Franco; Juana-María Vivo; Manuel Quesada-Martínez; Astrid Duque-Ramos; Jesualdo Tomás Fernández-Breis (Briefings Bioinform., 2020)

CLIN-IK-LINKS: A platform for the design and execution of clinical data transformation and reasoning workflows. - José Alberto Maldonado; Mar Marcos; Jesualdo Tomás Fernández-Breis; Vicente Miguel Giménez-Solano; María Del Carmen Legaz-García; Begoña Martínez-Salvador (Comput. Methods Programs Biomed., 2020)

BioHackathon 2015: Semantics of data for life sciences and reproducible research. - Rutger A. Vos; Toshiaki Katayama; Hiroyuki Mishima; Shin Kawano; Shuichi Kawashima; Jin-Dong Kim; Yuki Moriya; Toshiaki Tokimatsu; Atsuko Yamaguchi; Yasunori Yamamoto; Hongyan Wu; Peter Amstutz; et al. (F1000Research, 2020)

Analysis of readability and structural accuracy in SNOMED CT. - Francisco Abad Navarro; Manuel Quesada-Martínez; Astrid Duque-Ramos; Jesualdo Tomás Fernández-Breis (BMC Medical Informatics Decis. Mak., 2020)

Semankey: A Semantics-Driven Approach for Querying RDF Repositories Using Keywords. - Francisco Abad Navarro; Catalina Martínez-Costa; Jesualdo Tomás Fernández-Breis (IEEE Access, 2021)

Introduction to the special issue on Methods and applications in the analysis of social data in healthcare. - Alejandro Rodríguez González; Sebastián Ventura Soto; Paolo Soda; Jesualdo Tomás Fernández-Breis (Inf. Process. Manag., 2021)

Performance assessment of ontology matching systems for FAIR data. - Philip van Damme; Jesualdo Tomás Fernández-Breis; Nirupama Benis; José Antonio Miñarro-Giménez; Nicolette F. de Keizer; Ronald Cornet (J. Biomed. Semant., 2022)

An automated process for supporting decisions in clustering-based data analysis. - José Antonio Bernabé-Díaz; Manuel Franco; Juana-María Vivo; Manuel Quesada-Martínez; Jesualdo Tomás Fernández-Breis (Comput. Methods Programs Biomed., 2022)

A systematic literature review on the development and use of mobile learning (web) apps by early adopters. - Antonio Ruiz-Martínez; Linda J. Castañeda; Jesualdo Tomás Fernández-Breis (CoRR, 2022)

Using Machine Learning for Predicting the Effect of Mutations in the Initiation Codon. - Javier Díaz Alonso; Francisco Abad Navarro; María Eugenia de la Morena-Barrio; Javier Corral; Jesualdo Tomás Fernández-Breis (IEEE J. Biomed. Health Informatics, 2022)

Ontology Model for Supporting Process Mining on Healthcare-Related Data. - José Antonio Miñarro-Giménez; Carlos Fernández-Llatas; Begoña Martínez-Salvador; Catalina Martínez-Costa; Mar Marcos; Jesualdo Tomás Fernández-Breis (AIME, 2023)

HURON: A Quantitative Framework for Assessing Human Readability in Ontologies. - Francisco Abad Navarro; Catalina Martínez-Costa; Jesualdo Tomás Fernández-Breis (IEEE Access, 2023)

The cybersecurity ontology network: The first building block for a comprehensive cybersecurity knowledge graph (short paper). - Mikel Egaña Aranguren; Jesualdo Tomás Fernández-Breis; Alexander García Castro; Markus Rompe (JOWO, 2024)

Ontology network for the standardization of the EU CBAM report data (short paper). - Astrid Duque-Ramos; Jesualdo Tomás Fernández-Breis; Alexander García Castro; Andreas Rathgeb; Lars Nissen (JOWO, 2024)

Analysis of the Impact of Orthogonality in the Readability of the OBO Foundry Ontologies. - Francisco Javier Redondo-Aniorte; Francisco Abad Navarro; Jesualdo Tomás Fernández-Breis (WorldCIST (3), 2024)

Improving Air Quality Zoning Through Deep Learning and Hyperlocal Measurements. - Eduardo Illueca Fernández; Antonio Jesús Jara Valera; Jesualdo Tomás Fernández-Breis (IEEE Access, 2024)

ONTO-TDM domain ontology population for a specific discipline. - Rosana Abdoune; Lydia Lazib; Farida Bouarab-Dahmani; Jesualdo Tomás Fernández-Breis (Appl. Ontology, 2024)

Embedded machine learning of IoT streams to promote early detection of unsafe environments. - Eduardo Illueca Fernández; Antonio Jesús Jara Valera; Jesualdo Tomás Fernández-Breis (Internet Things, 2024)

OntoGenix: Leveraging Large Language Models for enhanced ontology engineering from datasets. - Mikel Val-Calvo; Mikel Egaña Aranguren; Juan M. Martínez-Hernández; Ginés Almagro-Hernández; Prashant Deshmukh; José Antonio Bernabé-Díaz; Paola Espinoza-Arias; José Luis Sánchez-Fernández; Juergen Mueller; Jesualdo Tomás Fernández-Breis (Inf. Process. Manag., 2025)

Evaluation of alignment methods to support the assessment of similarity between e-commerce knowledge graphs. - Ginés Almagro-Hernández; Juan M. Martínez-Hernández; Prashant Deshmukh; José Antonio Bernabé-Díaz; José Luis Sánchez-Fernández; Paola Espinoza-Arias; Juergen Mueller; Jesualdo Tomás Fernández-Breis (Knowl. Based Syst., 2025)

Representation of chemistry transport models simulations using knowledge graphs. - Eduardo Illueca Fernández; Antonio Jesús Jara Valera; Jesualdo Tomás Fernández-Breis (J. Cheminformatics, 2025)