Text Mining of Full Text Articles and Creation of a Knowledge Base for Analysis of Microarray Data. - Eric G. Bremer; Jeyakumar Natarajan; Yonghong Zhang; Catherine DeSesa; Catherine J. Hack; Werner Dubitzky (KELSI, 2004)

A Grid Infrastructure for Text Mining of Full Text Articles and Creation of a Knowledge Base of Gene Relations. - Jeyakumar Natarajan; Niranjan Mulay; Catherine DeSesa; Catherine J. Hack; Werner Dubitzky; Eric G. Bremer (ISBMDA, 2005)

GetItFull - A Tool for Downloading and Pre-processing Full-Text Journal Articles. - Jeyakumar Natarajan; Cliff Haines; Brian Berglund; Catherine DeSesa; Catherine J. Hack; Werner Dubitzky; Eric G. Bremer (KDLL, 2006)

Text mining of full-text journal articles combined with gene expression analysis reveals a relationship between sphingosine-1-phosphate and invasiveness of a glioblastoma cell line. - Jeyakumar Natarajan; Daniel P. Berrar; Werner Dubitzky; Catherine J. Hack; Yonghong Zhang; Catherine DeSesa; James R. Van Brocklyn; Eric G. Bremer (BMC Bioinform., 2006)

Information Retrieval and Text Mining Opportunities in Bioinformatics. - Jeyakumar Natarajan (COMAD, 2010)

miRNA-mRNA network detects hub mRNAs and cancer specific miRNAs in lung cancer. - Saranya Devaraj; Jeyakumar Natarajan (Silico Biol., 2012)

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task. - Cecilia N. Arighi; Ben Carterette; K. Bretonnel Cohen; Martin Krallinger; W. John Wilbur; Petra Fey; Robert J. Dodson; Laurel Cooper; Ceri E. Van Slyke; Wasila M. Dahdul; Paula M. Mabee; Donghui Li; et al. (Database J. Biol. Databases Curation, 2013)

PPInterFinder - a mining tool for extracting causal relations on human proteins from literature. - Kalpana Raja; Suresh Subramani; Jeyakumar Natarajan (Database J. Biol. Databases Curation, 2013)

A hybrid named entity tagger for tagging human proteins/genes. - Kalpana Raja; Suresh Subramani; Jeyakumar Natarajan (Int. J. Data Min. Bioinform., 2014)

ProNormz - An integrated approach for human proteins and protein kinases normalization. - Suresh Subramani; Kalpana Raja; Jeyakumar Natarajan (J. Biomed. Informatics, 2014)

HPIminer: A text mining system for building and visualizing human protein interaction networks and pathways. - Suresh Subramani; Raja Kalpana; Pankaj Moses Monickaraj; Jeyakumar Natarajan (J. Biomed. Informatics, 2015)

Overview of the interactive task in BioCreative V. - Qinghua Wang 003; Shabbir Syed-Abdul; Lara Almeida; Sophia Ananiadou; Yalbi I. Balderas-Martínez; Riza Batista-Navarro; David Campos 001; Lucy Chilton; Hui-Jou Chou; Gabriela Contreras; Laurel Cooper; Hong-Jie Dai; et al. (Database J. Biol. Databases Curation, 2016)

Stacked ensemble combined with fuzzy matching for biomedical named entity recognition of diseases. - Balu Bhasuran; Gurusamy Murugesan; Sabenabanu Abdulkadhar; Jeyakumar Natarajan (J. Biomed. Informatics, 2016)

BCC-NER: bidirectional, contextual clues named entity tagger for gene/protein mention recognition. - Gurusamy Murugesan; Sabenabanu Abdulkadhar; Balu Bhasuran; Jeyakumar Natarajan (EURASIP J. Bioinform. Syst. Biol., 2017)

Prediction of microRNAs involved in immune system diseases through network based features. - Archana Prabahar; Jeyakumar Natarajan (J. Biomed. Informatics, 2017)

Text mining and network analysis to find functional associations of genes in high altitude diseases. - Balu Bhasuran; Devika Subramanian; Jeyakumar Natarajan (Comput. Biol. Chem., 2018)

Mining protein phosphorylation information from biomedical literature using NLP parsing and Support Vector Machines. - Kalpana Raja; Jeyakumar Natarajan (Comput. Methods Programs Biomed., 2018)

In Silico Characterization of B Cell and T Cell Epitopes for Subunit Vaccine Design of Salmonella typhi PgtE: A Molecular Dynamics Simulation Approach. - Gopinath Samykannu; Princy Vijayababu; Christian Bharathi Antonyraj; Perumal Perumal; Sundarabaalaji Narayanan; Syed Ibrahim Basheer Ahamed; Jeyakumar Natarajan (J. Comput. Biol., 2019)

Molecular Mechanism of T-2 Toxin-Induced Cerebral Edema by Aquaporin-4 Blocking and Permeation. - Nikhil Maroli; Naveen Kumar Kalagatur; Balu Bhasuran; Achuth Jayakrishnan; Renuka Ramalingam Manoharan; Ponmalai Kolandaivel; Jeyakumar Natarajan; Krishna Kadirvelu (J. Chem. Inf. Model., 2019)

Classifying protein-protein interaction articles from biomedical literature using many relevant features and context-free grammar. - Sabenabanu Abdulkadhar; Gurusamy Murugesan; Jeyakumar Natarajan (J. King Saud Univ. Comput. Inf. Sci., 2020)

Automated Extraction and Visualization of Protein-Protein Interaction Networks and Beyond: A Text-Mining Protocol. - Kalpana Raja; Jeyakumar Natarajan; Finn Kuusisto; John W. Steill; Ian Ross; James A. Thomson; Ron M. Stewart (Protein-Protein Interaction Networks, 2020)

Integrated regulatory network based on lncRNA-miRNA-mRNA-TF reveals key genes and sub-networks associated with dilated cardiomyopathy. - Sona Charles; Jeyakumar Natarajan (Comput. Biol. Chem., 2021)

Multiscale Laplacian graph kernel combined with lexico-syntactic patterns for biomedical event extraction from literature. - Sabenabanu Abdulkadhar; Balu Bhasuran; Jeyakumar Natarajan (Knowl. Inf. Syst., 2021)

Transcriptomic meta-analysis reveals biomarker pairs and key pathways in Tetralogy of Fallot. - Sona Charles; Jeyakumar Natarajan (J. Bioinform. Comput. Biol., 2022)

Literature Based Discovery (LBD): Towards Hypothesis Generation and Knowledge Discovery in Biomedical Text Mining. - Balu Bhasuran; Gurusamy Murugesan; Jeyakumar Natarajan (CoRR, 2023)

DisGeReExT: a knowledge discovery system for exploration of disease-gene associations through large-scale literature-wide analysis study. - Balu Bhasuran; Jeyakumar Natarajan (Knowl. Inf. Syst., 2023)

Unraveling the Biomarker Prospects of High-Altitude Diseases: Insights from Biomolecular Event Network Constructed using Text Mining. - Balu Bhasuran; Sabenabanu Abdulkadhar; Jeyakumar Natarajan (CoRR, 2025)