GenoHoption: Bridging Gene Network Graphs and Single-Cell Foundation Models. - Jiabei Cheng; Jiachen Li; Kaiyuan Yang 009; Hongbin Shen; Ye Yuan (BIBM, 2024)

GexMolGen: cross-modal generation of hit-like molecules via large language model encoding of gene expression signatures. - Jiabei Cheng; Xiaoyong Pan; Yi Fang; Kaiyuan Yang 009; Yiming Xue; Qingran Yan; Ye Yuan (Briefings Bioinform., 2024)

Predicting transcriptional changes induced by molecules with MiTCP. - Kaiyuan Yang 009; Jiabei Cheng; Shenghao Cao; Xiaoyong Pan; Hong-Bin Shen; Ye Yuan (Briefings Bioinform., 2024)

Towards Unified Molecule-Enhanced Pathology Image Representation Learning via Integrating Spatial Transcriptomics. - Minghao Han; Dingkang Yang; Jiabei Cheng; Xukun Zhang; Linhao Qu; Zizhi Chen; Lihua Zhang (CoRR, 2024)

Modeling Behavior Change for Multi-model At-Risk Students Early Prediction (extended version). - Jiabei Cheng; Zhen-Qun Yang; Jiannong Cao 001; Yu Yang 012; Kai Cheung Franky Poon; Daniel Lai (CoRR, 2025)

GRAPE: Heterogeneous Graph Representation Learning for Genetic Perturbation with Coding and Non-Coding Biotype. - Changxi Chi; Jun Xia 001; Jingbo Zhou; Jiabei Cheng; Chang Yu 001; Stan Z. Li (CoRR, 2025)

Predicting Student Dropout Risk With A Dual-Modal Abrupt Behavioral Changes Approach. - Jiabei Cheng; Zhen-Qun Yang; Jiannong Cao 001; Yu Yang 012; Xinzhe Zheng 002 (CoRR, 2025)