MG-BERT: leveraging unsupervised atomic representation learning for molecular property prediction. - Xiao-Chen Zhang; Chengkun Wu; Zhi-Jiang Yang; Zhen-Xing Wu; Jiacai Yi; Chang-Yu Hsieh; Tingjun Hou; Dong-Sheng Cao 001 (Briefings Bioinform., 2021)

Mining microbe-disease interactions from literature via a transfer learning model. - Chengkun Wu; Xinyi Xiao; Canqun Yang; Jinxiang Chen; Jiacai Yi; Yanlong Qiu (BMC Bioinform., 2021)

ADMETlab 2.0: an integrated online platform for accurate and comprehensive predictions of ADMET properties. - Guo-Li Xiong; Zhenxing Wu; Jiacai Yi; Li Fu; Zhi-Jiang Yang; Chang-Yu Hsieh; Mingzhu Yin; Xiangxiang Zeng; Chengkun Wu; Ai-Ping Lu; Xiang Chen; Tingjun Hou; et al. (Nucleic Acids Res., 2021)

ABC-Net: a divide-and-conquer based deep learning architecture for SMILES recognition from molecular images. - Xiao-Chen Zhang; Jiacai Yi; Guo-Ping Yang; Chengkun Wu; Tingjun Hou; Dong-Sheng Cao 001 (Briefings Bioinform., 2022)

MICER: a pre-trained encoder-decoder architecture for molecular image captioning. - Jiacai Yi; Chengkun Wu; Xiao-Chen Zhang; Xinyi Xiao; Yanlong Qiu; Wentao Zhao; Tingjun Hou; Dong-Sheng Cao 001 (Bioinform., 2022)

DDInter: an online drug-drug interaction database towards improving clinical decision-making and patient safety. - Guo-Li Xiong; Zhi-Jiang Yang; Jiacai Yi; Ningning Wang; Lei Wang; Huimin Zhu; Chengkun Wu; Ai-Ping Lu; Xiang Chen; Shao Liu; Tingjun Hou; Dongsheng Cao 001 (Nucleic Acids Res., 2022)

ChemMORT: an automatic ADMET optimization platform using deep learning and multi-objective particle swarm optimization. - Jiacai Yi; Zi-Yi Yang; Wen-Tao Zhao; Zhi-Jiang Yang; Xiao-Chen Zhang; Chengkun Wu; Ai-Ping Lu; Dong-Sheng Cao 001 (Briefings Bioinform., 2024)

ISTransbase: an online database for inhibitor and substrate of drug transporters. - Jinfu Peng; Jiacai Yi; Guoping Yang; Zhijun Huang; Dong-Sheng Cao 001 (Database J. Biol. Databases Curation, 2024)