Network Refinement: A unified framework for enhancing signal or removing noise of networks. - Jiating Yu; Jiacheng Leng; Ling-Yun Wu (CoRR, 2021)

Interaction-based transcriptome analysis via differential network inference. - Jiacheng Leng; Ling-Yun Wu (Briefings Bioinform., 2022)

Importance-Penalized Joint Graphical Lasso (IPJGL): differential network inference via GGMs. - Jiacheng Leng; Ling-Yun Wu (Bioinform., 2022)

PathExpSurv: pathway expansion for explainable survival analysis and disease gene discovery. - Zhichao Hou; Jiacheng Leng; Jiating Yu; Zheng Xia; Ling-Yun Wu (BMC Bioinform., 2023)

Incorporating network diffusion and peak location information for better single-cell ATAC-seq data analysis. - Jiating Yu; Jiacheng Leng; Zhichao Hou; Duanchen Sun; Ling-Yun Wu (Briefings Bioinform., 2024)