A comparison of deep learning-based pre-processing and clustering approaches for single-cell RNA sequencing data. - Jiacheng Wang 009; Quan Zou 001; Chen Lin 001 (Briefings Bioinform., 2022)

Deep learning models for disease-associated circRNA prediction: a review. - Yaojia Chen; Jiacheng Wang 009; Chuyu Wang; Mingxin Liu; Quan Zou 001 (Briefings Bioinform., 2022)

AAHLDMA: Predicting Drug-Microbe Associations Based on Bridge Graph Learning. - Yaojia Chen; Mengting Niu; Yi Liu 112; Jiacheng Wang 009; Yijie Ding; Quan Zou 001 (ICIC (LNBI 2), 2024)

AutoEdge-CCP: A novel approach for predicting cancer-associated circRNAs and drugs based on automated edge embedding. - Yaojia Chen; Jiacheng Wang 009; Chunyu Wang 002; Quan Zou 001 (PLoS Comput. Biol., 2024)

GRACE: Unveiling Gene Regulatory Networks With Causal Mechanistic Graph Neural Networks in Single-Cell RNA-Sequencing Data. - Jiacheng Wang 009; Yaojia Chen; Quan Zou 001 (IEEE Trans. Neural Networks Learn. Syst., 2025)