In the light of deep coalescence: revisiting trees within networks. - Jiafan Zhu; Yun Yu; Luay Nakhleh (BMC Bioinform., 2016)

Inference of species phylogenies from bi-allelic markers using pseudo-likelihood. - Jiafan Zhu; Luay Nakhleh (Bioinform., 2018)

Bayesian inference of phylogenetic networks from bi-allelic genetic markers. - Jiafan Zhu; Dingqiao Wen; Yun Yu; Heidi M. Meudt; Luay Nakhleh (PLoS Comput. Biol., 2018)

Empirical Performance of Tree-Based Inference of Phylogenetic Networks. - Zhen Cao; Jiafan Zhu; Luay Nakhleh (WABI, 2019)

A divide-and-conquer method for scalable phylogenetic network inference from multilocus data. - Jiafan Zhu; Xinhao Liu 004; Huw A. Ogilvie; Luay Nakhleh (Bioinform., 2019)

GASS: GPU Automated Sharing at Scale. - Jiafan Zhu; Xiao Zhang; Konstantinos Menychtas; Zhijing Gene Qin; Steven Hand 001; Dragos Sbirlea; Yuang Liu (CLOUD, 2024)