Measuring the Performance and Reliability of Production Computational Grids. - Omid Khalili; Jiahua He; Catherine Olschanowsky; Allan Snavely; Henri Casanova (GRID, 2006)

Code coverage, performance approximation and automatic recognition of idioms in scientific applications. - Jiahua He; Allan Snavely; Rob F. Van der Wijngaart; Michael A. Frumkin (HPDC, 2008)

Understanding the Impact of Emerging Non-Volatile Memories on High-Performance, IO-Intensive Computing. - Adrian M. Caulfield; Joel Coburn; Todor I. Mollov; Arup De; Ameen Akel; Jiahua He; Arun Jagatheesan; Rajesh K. Gupta 001; Allan Snavely; Steven Swanson (SC, 2010)

DASH: a Recipe for a Flash-based Data Intensive Supercomputer. - Jiahua He; Arun Jagatheesan; Sandeep K. S. Gupta; Jeffrey Bennett; Allan Snavely (SC, 2010)

DASH-IO: an empirical study of flash-based IO for HPC. - Jiahua He; Jeffrey Bennett; Allan Snavely (TG, 2010)

Automatic Recognition of Performance Idioms in Scientific Applications. - Jiahua He; Allan Snavely; Rob F. Van der Wijngaart; Michael A. Frumkin (IPDPS, 2011)

PMap : unlocking the performance genes of HPC applications. - Jiahua He (2011)

Protein-ensemble-RNA docking by efficient consideration of protein flexibility through homology models. - Jiahua He; Huanyu Tao; Sheng-You Huang (Bioinform., 2019)

PepBDB: a comprehensive structural database of biological peptide-protein interactions. - Zeyu Wen; Jiahua He; Huanyu Tao; Sheng-You Huang (Bioinform., 2019)

HNADOCK: a nucleic acid docking server for modeling RNA/DNA-RNA/DNA 3D complex structures. - Jiahua He; Jun Wang; Huanyu Tao; Yi Xiao; Sheng-You Huang (Nucleic Acids Res., 2019)

Topology-independent and global protein structure alignment through an FFT-based algorithm. - Zeyu Wen; Jiahua He; Sheng-You Huang (Bioinform., 2020)

EMNUSS: a deep learning framework for secondary structure annotation in cryo-EM maps. - Jiahua He; Sheng-You Huang (Briefings Bioinform., 2021)

Full-length de novo protein structure determination from cryo-EM maps using deep learning. - Jiahua He; Sheng-You Huang (Bioinform., 2021)

TRScore: a 3D RepVGG-based scoring method for ranking protein docking models. - Linyuan Guo; Jiahua He; Peicong Lin; Sheng-You Huang; Jianxin Wang 001 (Bioinform., 2022)

Deciphering Protein Secondary Structures and Nucleic Acids in Cryo-EM Maps Using Deep Learning. - Hong Cao; Jiahua He; Tao Li; Sheng-You Huang (J. Chem. Inf. Model., 2025)