Evaluation of subgraph searching algorithms detecting network motif in biological networks. - Jialu Hu; Lin Gao 006; Guimin Qin (Frontiers Comput. Sci. China, 2009)

NetCoffee: a fast and accurate global alignment approach to identify functionally conserved proteins in multiple networks. - Jialu Hu; Birte Kehr; Knut Reinert (Bioinform., 2014)

LocalAli: an evolutionary-based local alignment approach to identify functionally conserved modules in multiple networks. - Jialu Hu; Knut Reinert (Bioinform., 2015)

Algorithms to Identify Functional Orthologs And Functional Modules from High- Throughput Data (Algorithmen zur Identifizierung von Funktions-Orthologen und Funktionsmodulen von Hochdurchsatz-Daten) - Jialu Hu (2015)

Analyzing factors involved in the HPO-based semantic similarity calculation. - Jiajie Peng; Qianqian Li; Bolin Chen; Jialu Hu; Xuequn Shang 001 (BIBM, 2016)

MiteFinder: A fast approach to identify miniature inverted-repeat transposable elements on a genome-wide scale. - Jialu Hu; Yan Zheng; Xuequn Shang 001 (BIBM, 2017)

Identification of lncRNA-disease association using bi-random walks. - Yiqun Gao; Jialu Hu; Xuequn Shang 001 (BIBM, 2018)

NetCoffee2: A Novel Global Alignment Algorithm for Multiple PPI Networks Based on Graph Feature Vectors. - Jialu Hu; Junhao He; Yiqun Gao; Yan Zheng; Xuequn Shang 001 (ICIC (2), 2018)

WebNetCoffee: a web-based application to identify functionally conserved proteins from Multiple PPI networks. - Jialu Hu; Yiqun Gao; Junhao He; Yan Zheng; Xuequn Shang 001 (BMC Bioinform., 2018)

KF-finder: identification of key factors from host-microbial networks in cervical cancer. - Jialu Hu; Yiqun Gao; Yan Zheng; Xuequn Shang 001 (BMC Syst. Biol., 2018)

Deep learning enables accurate alignment of single cell RNA-seq data. - Yuanke Zhong; Jing Li; Jie Liu; Yan Zheng; Xuequn Shang 001; Jialu Hu (BIBM, 2019)

A novel algorithm based on bi-random walks to identify disease-related lncRNAs. - Jialu Hu; Yiqun Gao; Jing Li; Yan Zheng; Jingru Wang; Xuequn Shang 001 (BMC Bioinform., 2019)

MD-SVM: a novel SVM-based algorithm for the motif discovery of transcription factor binding sites. - Jialu Hu; Jingru Wang; Jianan Lin; Tianwei Liu; Yuanke Zhong; Jie Liu; Yan Zheng; Yiqun Gao; Junhao He; Xuequn Shang 001 (BMC Bioinform., 2019)

Twadn: an efficient alignment algorithm based on time warping for pairwise dynamic networks. - Yuanke Zhong; Jing Li; Junhao He; Yiqun Gao; Jie Liu; Jingru Wang; Xuequn Shang 001; Jialu Hu (BMC Bioinform., 2020)

SCC: an accurate imputation method for scRNA-seq dropouts based on a mixture model. - Yan Zheng; Yuanke Zhong; Jialu Hu; Xuequn Shang 001 (BMC Bioinform., 2021)

A multi-source fusion method to identify biomarkers for breast cancer prognosis based on dual-layer heterogeneous network. - Xingyi Li; Zhelin Zhao; Ju Xiang; Jialu Hu; Xuequn Shang 001 (BIBM, 2022)

A versatile and scalable single-cell data integration algorithm based on domain-adversarial and variational approximation. - Jialu Hu; Yuanke Zhong; Xuequn Shang 001 (Briefings Bioinform., 2022)

Hybrid-360: An adaptive bitrate algorithm for tile-based 360 video streaming. - Shujie Yang; Jialu Hu; Ke Jiang; Han Xiao; Mu Wang (Trans. Emerg. Telecommun. Technol., 2022)

360 ROI Exploration: Region of Interest Exploration for Caching in VR Panoramic video Transmission. - Renjie Ding; Zichen Feng; Han Xiao; Jialu Hu; Yunxiao Ma; Chuxing Fang; Shuai Peng (HP3C, 2023)

Design of Tile-Based VR Transcoding and Transmission System for Metaverse. - Chuxing Fang; Jialu Hu (HP3C, 2023)

Adaptive Anti-jitter Optimization for Immersive Streaming in Metaverse Scenarios. - Ke Jiang; Jialu Hu; Chuxing Fang; Hongjing Li (HP3C, 2023)

Spherical Convolution-based Saliency Detection for FoV Prediction in 360-degree Video Streaming. - Shuai Peng; Jialu Hu; Zitong Li; Han Xiao; Shujie Yang; Changqiao Xu (IWCMC, 2023)

Application of smart devices in investigating the effects of air pollution on atrial fibrillation onset. - Cong Liu; Meihui Tai; Jialu Hu; Xinlei Zhu; Weidong Wang; Yutao Guo; Haidong Kan; Renjie Chen (npj Digit. Medicine, 2023)

A multi-view latent variable model reveals cellular heterogeneity in complex tissues for paired multimodal single-cell data. - Yuwei Wang; Bin Lian; Haohui Zhang; Yuanke Zhong; Jie He; Fashuai Wu; Knut Reinert; Xuequn Shang 001; Hui Yang; Jialu Hu (Bioinform., 2023)

Accurately deciphering spatial domains for spatially resolved transcriptomics with stCluster. - Tao Wang 082; Han Shu; Jialu Hu; Yongtian Wang; Jin Chen 004; Jiajie Peng; Xuequn Shang 001 (Briefings Bioinform., 2024)

Non-adaptive Bellman-Ford: Yen's improvement is optimal. - Jialu Hu; László Kozma 002 (CoRR, 2024)

Scbean: a python library for single-cell multi-omics data analysis. - Haohui Zhang; Yuwei Wang; Bin Lian; Yiran Wang; Xingyi Li; Tao Wang 082; Xuequn Shang 001; Hui Yang; Ahmad Aziz; Jialu Hu (Bioinform., 2024)

Inference of gene coexpression networks from single-cell transcriptome data based on variance decomposition analysis. - Bin Lian; Haohui Zhang; Tao Wang 082; Yongtian Wang; Xuequn Shang 001; N. Ahmad Aziz; Jialu Hu (Briefings Bioinform., 2025)

cfMethylPre: deep transfer learning enhances cancer detection based on circulating cell-free DNA methylation profiling. - Xuchao Zhang; Jing Chen; Yongtian Wang; Xiaofeng Wang; Jialu Hu; Jiajie Peng; Xuequn Shang 001; Yanpu Wang; Tao Wang 082 (Briefings Bioinform., 2025)

MAEST: accurately spatial domain detection in spatial transcriptomics with graph masked autoencoder. - Pengfei Zhu; Han Shu; Yongtian Wang; Xiaofeng Wang; Yuan Zhao; Jialu Hu; Jiajie Peng; Xuequn Shang 001; Zhen Tian; Jing Chen; Tao Wang 082 (Briefings Bioinform., 2025)