MIMOX: a web tool for phage display based epitope mapping. - Jian Huang 004; Alex Gutteridge; Wataru Honda; Minoru Kanehisa (BMC Bioinform., 2006)

MimoDB 2.0: a mimotope database and beyond. - Jian Huang 004; Beibei Ru; Ping Zhu 002; Fulei Nie; Jun Yang; Xuyang Wang; Ping Dai; Hao Lin 001; Feng-Biao Guo; Nini Rao (Nucleic Acids Res., 2012)

Epitope Mapping of Metuximab on CD147 Using Phage Display and Molecular Docking. - Bifang He; Canquan Mao; Beibei Ru; Hesong Han; Peng Zhou 003; Jian Huang 004 (Comput. Math. Methods Medicine, 2013)

Phage Display Informatics. - Jian Huang 004; Ratmir Derda; Yanxin Huang (Comput. Math. Methods Medicine, 2013)

Biomacromolecular quantitative structure-activity relationship (BioQSAR): a proof-of-concept study on the modeling, prediction and interpretation of protein-protein binding affinity. - Peng Zhou 003; Congcong Wang; Feifei Tian; Yanrong Ren; Chao Yang 023; Jian Huang 004 (J. Comput. Aided Mol. Des., 2013)

Phd7faster: Predicting Clones Propagating Faster from the pH.D.-7 phage Display peptide Library. - Beibei Ru; Peter A. C. 't Hoen; Fulei Nie; Hao Lin 001; Feng-Biao Guo; Jian Huang 004 (J. Bioinform. Comput. Biol., 2014)

Self-Binding Peptides: Folding or Binding? - Chao Yang 023; Shilei Zhang; Ping He; Congcong Wang; Jian Huang 004; Peng Zhou 003 (J. Chem. Inf. Model., 2015)

Predicting bacteriophage proteins located in host cell with feature selection technique. - Hui Ding 005; Zhi-Yong Liang; Feng-Biao Guo; Jian Huang 004; Wei Chen 064; Hao Lin 001 (Comput. Biol. Medicine, 2016)

BDB: biopanning data bank. - Bifang He; Guoshi Chai; Yaocong Duan; Zhiqiang Yan; Liuyang Qiu; Huixiong Zhang; Zechun Liu; Qiang He; Ke Han; Beibei Ru; Feng-Biao Guo; Hui Ding 005; et al. (Nucleic Acids Res., 2016)

Identify and analysis crotonylation sites in histone by using support vector machines. - Wangren Qiu; Bi-Qian Sun; Hua Tang; Jian Huang 004; Hao Lin 001 (Artif. Intell. Medicine, 2017)

The 7th National Conference on Bioinformatics and Systems Biology of China. - Zhirong Sun; Kui Hua; Xuegong Zhang; Feng-Biao Guo; Jian Huang 004 (Quant. Biol., 2017)

A Fast Genome Sequence Aligner Based on Minimal Perfect Hash Algorithm Realized with FPGA Based Heterogeneous Computing Platform. - Ke Huang; Shubo Yang; Zhaojian Luo; Ke Yang; Menghan Chen; Guopeng Wei; Jian Huang 004 (ISBRA, 2018)

Biopanning data bank 2018: hugging next generation phage display. - Bifang He; Lixu Jiang; Yaocong Duan; Guoshi Chai; Yewei Fang; Juanjuan Kang; Min Yu; Ning Li; Zhongjie Tang; Pengcheng Yao; Pengcheng Wu; Ratmir Derda; et al. (Database J. Biol. Databases Curation, 2018)

LnChrom: a resource of experimentally validated lncRNA-chromatin interactions in human and mouse. - Fulong Yu; Guanxiong Zhang; Aiai Shi; Jing Hu; Feng Li; Xinxin Zhang; Yan Zhang; Jian Huang 004; Yun Xiao 001; Xia Li 004; Shujun Cheng (Database J. Biol. Databases Curation, 2018)

Anti-CRISPRdb: a comprehensive online resource for anti-CRISPR proteins. - Chuan Dong; Ge-Fei Hao; Hong-Li Hua; Shuo Liu; Abraham A. Labena; Guoshi Chai; Jian Huang 004; Nini Rao; Feng-Biao Guo (Nucleic Acids Res., 2018)

Genome-wide Association of APOE and FOXO3A for human longevity: A Systematic Review. - Birga Anteneh Mengesha; Jian Huang 004 (ICBBS, 2019)

Whole-Genome Shotgun Sequence of Natronobacterium gregoryi SP2. - Lixu Jiang; Hao Xu; Zhixi Yun; Jiayi Yin; Juanjuan Kang; Bifang He; Jian Huang 004 (ICIC (2), 2019)

Survey of miRNA-miRNA cooperative regulation principles across cancer types. - Tingting Shao; Guangjuan Wang; Hong Chen 022; Yunjin Xie; Xiyun Jin; Jing Bai 014; Juan Xu 001; Xia Li 004; Jian Huang 004; Yan Jin 007; Yongsheng Li 001 (Briefings Bioinform., 2019)

CasPDB: an integrated and annotated database for Cas proteins from bacteria and archaea. - Zhongjie Tang; ShaoQi Chen; Ang Chen; Bifang He; Yuwei Zhou; Guoshi Chai; Feng-Biao Guo; Jian Huang 004 (Database J. Biol. Databases Curation, 2019)

RIscoper: a tool for RNA-RNA interaction extraction from the literature. - Yang Zhang 125; Tianyuan Liu; Liqun Chen; Jinxurong Yang; Jiayi Yin; Yuncong Zhang; Zhixi Yun; Hao Xu; Lin Ning 002; Feng-Biao Guo; Yongshuai Jiang; Hao Lin 001; et al. (Bioinform., 2019)

PVsiRNAPred: Prediction of plant exclusive virus-derived small interfering RNAs by deep convolutional neural network. - Bifang He; Jian Huang 004; Heng Chen (J. Bioinform. Comput. Biol., 2019)

HMMCAS: A Web Tool for the Identification and Domain Annotations of CAS Proteins. - Guoshi Chai; Min Yu; Lixu Jiang; Yaocong Duan; Jian Huang 004 (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Guest Editorial for Special Section on the 7th National Conference on Bioinformatics and Systems Biology of China. - Feng-Biao Guo; Xinglai Ji; Jian Huang 004 (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

A comprehensive overview of oncogenic pathways in human cancer. - Feng Li; Tan Wu; Yanjun Xu; Qun Dong; Jing Xiao; Yingqi Xu; Qian Li; Chunlong Zhang; Jianxia Gao; Liqiu Liu; Xiaoxu Hu; Jian Huang 004; et al. (Briefings Bioinform., 2020)

DNA4mC-LIP: a linear integration method to identify N4-methylcytosine site in multiple species. - Qiang Tang 013; Juanjuan Kang; Jiaqing Yuan; Hua Tang; Xianhai Li; Hao Lin 001; Jian Huang 004; Wei Chen 064 (Bioinform., 2020)

TB-LNPs: A Web Server for Access to Lung Nodule Prediction Models. - Huaichao Luo; Ning Lin; Lin Wu; Ziru Huang; Ruiling Zu; Jian Huang 004 (ICIC (2), 2022)

AGODB: a comprehensive domain annotation database of argonaute proteins. - Bowen Li; Shanshan Yang; Jinjin Long; Xue Chen; Qianyue Zhang; Lin Ning 002; Bifang He; Heng Chen; Jian Huang 004 (Database J. Biol. Databases Curation, 2022)

Analysis and modeling of myopia-related factors based on questionnaire survey. - Jianqiang Xiao; Mujiexin Liu; Qinlai Huang; Zijie Sun; Lin Ning 002; Junguo Duan; Siquan Zhu; Jian Huang 004; Hao Lin 001; Hui Yang (Comput. Biol. Medicine, 2022)

Clinlabomics: leveraging clinical laboratory data by data mining strategies. - Xiaoxia Wen; Ping Leng; Jiasi Wang; Guishu Yang; Ruiling Zu; Xiaojiong Jia; Kaijiong Zhang; Birga Anteneh Mengesha; Jian Huang 004; Dongsheng Wang; Huaichao Luo (BMC Bioinform., 2022)

Detecting key genes relative expression orderings as biomarkers for machine learning-based intelligent screening and analysis of type 2 diabetes mellitus. - Xue-Qin Xie; Changchun Wu; Cai-Yi Ma; Dong Gao 002; Wei Sun; Jian Huang 004; Kejun Deng; Dan Yan; Hao Lin 001 (Expert Syst. Appl., 2024)

AbNumPro: A comprehensive offline toolkit for antibody numbering and antigen-binding region prediction. - Wenzhen Li; Hongyan Lin; Lvxin Peng; Qianhu Jiang; Yushu Gou; Lu Xie; Jian Huang 004 (Softw. Impacts, 2025)