MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore. - Jian Ren 002; Zexian Liu; Xinjiao Gao; Changjiang Jin; Mingliang Ye; Hanfa Zou; Longping Wen; Zhaolei Zhang; Yu Xue 001; Xuebiao Yao (Nucleic Acids Res., 2010)

CPLA 1.0: an integrated database of protein lysine acetylation. - Zexian Liu; Jun Cao; Xinjiao Gao; Yanhong Zhou; Longping Wen; Xiangjiao Yang; Xuebiao Yao; Jian Ren 002; Yu Xue 001 (Nucleic Acids Res., 2011)

Systematic analysis of the Plk-mediated phosphoregulation in eukaryotes. - Zexian Liu; Jian Ren 002; Jun Cao; Jiang He; Xuebiao Yao; Changjiang Jin; Yu Xue 001 (Briefings Bioinform., 2013)

UUCD: a family-based database of ubiquitin and ubiquitin-like conjugation. - Tianshun Gao; Zexian Liu; Yongbo Wang; Han Cheng; Qing Yang; Anyuan Guo; Jian Ren 002; Yu Xue 001 (Nucleic Acids Res., 2013)

dbPPT: a comprehensive database of protein phosphorylation in plants. - Han Cheng; Wankun Deng; Yongbo Wang; Jian Ren 002; Zexian Liu; Yu Xue 001 (Database J. Biol. Databases Curation, 2014)

CPLM: a database of protein lysine modifications. - Zexian Liu; Yongbo Wang; Tianshun Gao; Zhicheng Pan; Han Cheng; Qing Yang; Zhongyi Cheng; Anyuan Guo; Jian Ren 002; Yu Xue 001 (Nucleic Acids Res., 2014)

GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs. - Qi Zhao; Yubin Xie; Yueyuan Zheng; Shuai Jiang; Wenzhong Liu; Weiping Mu; Zexian Liu; Yong Zhao 013; Yu Xue 001; Jian Ren 002 (Nucleic Acids Res., 2014)

dbPSP: a curated database for protein phosphorylation sites in prokaryotes. - Zhicheng Pan; Bangshan Wang; Ying Zhang 052; Yongbo Wang; Shahid Ullah; Jian Ren 002; Zexian Liu; Yu Xue 001 (Database J. Biol. Databases Curation, 2015)

IBS: an illustrator for the presentation and visualization of biological sequences. - Wenzhong Liu; Yubin Xie; Jiyong Ma; Xiaotong Luo; Peng Nie; Zhixiang Zuo; Urs Lahrmann; Qi Zhao; Yueyuan Zheng; Yong Zhao 013; Yu Xue 001; Jian Ren 002 (Bioinform., 2015)

MiCroKiTS 4.0: a database of midbody, centrosome, kinetochore, telomere and spindle. - Zhengnan Huang; Lili Ma; Yongbo Wang; Zhicheng Pan; Jian Ren 002; Zexian Liu; Yu Xue 001 (Nucleic Acids Res., 2015)

RPFdb: a database for genome wide information of translated mRNA generated from ribosome profiling. - Shang-Qian Xie; Peng Nie; Yan Wang; Hongwei Wang 003; Hongyu Li; Zhilong Yang; Yizhi Liu; Jian Ren 002; Zhi Xie (Nucleic Acids Res., 2016)

DeepNitro: Prediction of Protein Nitration and Nitrosylation Sites by Deep Learning. - Yubin Xie; Xiaotong Luo; Yupeng Li; Li Chen; Wenbin Ma; Junjiu Huang; Jun Cui; Yong Zhao 013; Yu Xue 001; Zhixiang Zuo; Jian Ren 002 (Genom. Proteom. Bioinform., 2018)

m6AVar: a database of functional variants involved in m6A modification. - Yueyuan Zheng; Peng Nie; Di Peng; Zhihao He; Mengni Liu; Yubin Xie; Yanyan Miao; Zhixiang Zuo; Jian Ren 002 (Nucleic Acids Res., 2018)

CrossICC: iterative consensus clustering of cross-platform gene expression data without adjusting batch effect. - Qi Zhao; Yu Sun; Zekun Liu; Hongwan Zhang; Xingyang Li; Kaiyu Zhu; Zexian Liu; Jian Ren 002; Zhixiang Zuo (Briefings Bioinform., 2020)

BBCancer: an expression atlas of blood-based biomarkers in the early diagnosis of cancers. - Zhixiang Zuo; Huanjing Hu; Qingxian Xu; Xiaotong Luo; Di Peng; Kaiyu Zhu; Qi Zhao; Yubin Xie; Jian Ren 002 (Nucleic Acids Res., 2020)

RMVar: an updated database of functional variants involved in RNA modifications. - Xiaotong Luo; Huiqin Li; Jiaqi Liang; Qi Zhao; Yubin Xie; Jian Ren 002; Zhixiang Zuo (Nucleic Acids Res., 2021)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Shuhui Song; Lina Ma; et al. (Nucleic Acids Res., 2021)

MeRIPseqPipe: an integrated analysis pipeline for MeRIP-seq data based on Nextflow. - Xiaoqiong Bao; Kaiyu Zhu; Xuefei Liu; Zhihang Chen 002; Ziwei Luo; Qi Zhao; Jian Ren 002; Zhixiang Zuo (Bioinform., 2022)

TIRSF: a web server for screening gene signatures to predict Tumor immunotherapy response. - Li Chen; Tianjian Chen; Ya Zhang; Haichen Lin; Ruihan Wang; Yihang Wang; Hongyu Li; Zhixiang Zuo; Jian Ren 002; Yubin Xie (Nucleic Acids Res., 2022)

RPS: a comprehensive database of RNAs involved in liquid-liquid phase separation. - Mengni Liu; Huiqin Li; Xiaotong Luo; Jieyi Cai; Tianjian Chen; Yubin Xie; Jian Ren 002; Zhixiang Zuo (Nucleic Acids Res., 2022)

SPENCER: a comprehensive database for small peptides encoded by noncoding RNAs in cancer patients. - Xiaotong Luo; Yuantai Huang; Huiqin Li; Yihai Luo; Zhixiang Zuo; Jian Ren 002; Yubin Xie (Nucleic Acids Res., 2022)

IBS 2.0: an upgraded illustrator for the visualization of biological sequences. - Yubin Xie; Huiqin Li; Xiaotong Luo; Hongyu Li; Qiuyuan Gao; Luowanyue Zhang; Yuyan Teng; Qi Zhao; Zhixiang Zuo; Jian Ren 002 (Nucleic Acids Res., 2022)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Jingyao Zeng; Yadong Zhang; et al. (Nucleic Acids Res., 2022)

RM2Target: a comprehensive database for targets of writers, erasers and readers of RNA modifications. - Xiaoqiong Bao; Yin Zhang; Huiqin Li; Yuyan Teng; Lixia Ma; Zhihang Chen 002; Xiaotong Luo; Jian Zheng; An Zhao; Jian Ren 002; Zhixiang Zuo (Nucleic Acids Res., 2023)

TIGER: A Web Portal of Tumor Immunotherapy Gene Expression Resource. - Zhihang Chen 002; Ziwei Luo; Di Zhang; Huiqin Li; Xuefei Liu; Kaiyu Zhu; Hongwan Zhang; Zongping Wang; Penghui Zhou; Jian Ren 002; An Zhao; Zhixiang Zuo (Genom. Proteom. Bioinform., 2023)

AStruct: detection of allele-specific RNA secondary structure in structuromic probing data. - Qingru Xu; Xiaoqiong Bao; Zhuobin Lin; Lin Tang; Li-na He; Jian Ren 002; Zhixiang Zuo; Kunhua Hu (BMC Bioinform., 2024)