Jian Wang

According to our database, Jian Wang authored at least 144 papers between 2011 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Predicting Protein Functions Based on Heterogeneous Graph Attention Technique.

Yingwen Zhao, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

IEEE J. Biomed. Health Informatics, April, 2024

2023

Hyperbolic hierarchical knowledge graph embeddings for biological entities.

Nan Li, Zhihao Yang, Yumeng Yang, Jian Wang, Hongfei Lin

J. Biomed. Informatics, November, 2023

A Self-Supervised Framework for Learning Biological Entities Representation by Fusing Class Information.

Nan Li, Zhihao Yang, Jian Wang, Hongfei Lin

IEEE J. Biomed. Health Informatics, August, 2023

Automatic International Classification of Diseases Coding via Note-Code Interaction Network with Denoising Mechanism.

Xiaobo Li, Yi-Jia Zhang, Xingwang Li, Xianwei Pan, Jian Wang, Mingyu Lu

J. Comput. Biol., August, 2023

Graph augmented sequence-to-sequence model for neural question generation.

Hui Ma, Jian Wang, Hongfei Lin, Bo Xu

Appl. Intell., June, 2023

Multi-perspective respondent representations for answer ranking in community question answering.

Lingfei Qian, Jian Wang, Hongfei Lin, Liang Yang

Inf. Sci., May, 2023

Improving Protein Function Prediction by Adaptively Fusing Information From Protein Sequences and Biomedical Literature.

Yingwen Zhao, Zhihao Yang, Yongkai Hong, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

IEEE J. Biomed. Health Informatics, February, 2023

Knowledge Guided Attention and Graph Convolutional Networks for Chemical-Disease Relation Extraction.

Yi Sun, Jian Wang, Hongfei Lin, Yijia Zhang, Zhihao Yang

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Knowledge Adaptive Multi-Way Matching Network for Biomedical Named Entity Recognition via Machine Reading Comprehension.

Peng Chen, Jian Wang, Hongfei Lin, Yijia Zhang, Zhihao Yang

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Taiyi: A Bilingual Fine-Tuned Large Language Model for Diverse Biomedical Tasks.

Ling Luo, Jinzhong Ning, Yingwen Zhao, Zhijun Wang, Zeyuan Ding, Peng Chen, Weiru Fu, Qinyu Han, Guangtao Xu, Yunzhi Qiu, Dinghao Pan, Jiru Li, Hao Li, Wenduo Feng, Senbo Tu, Yuqi Liu, Zhihao Yang, Jian Wang, Yuanyuan Sun, Hongfei Lin

CoRR, 2023

ZRIGF: An Innovative Multimodal Framework for Zero-Resource Image-Grounded Dialogue Generation.

Bo Zhang, Jian Wang, Hui Ma, Bo Xu, Hongfei Lin

Proceedings of the 31st ACM International Conference on Multimedia, 2023

2022

Exploiting Pairwise Mutual Information for Knowledge-Grounded Dialogue.

Bo Zhang, Jian Wang, Hongfei Lin, Hui Ma, Bo Xu

IEEE ACM Trans. Audio Speech Lang. Process., 2022

Heterogeneous information network embedding based on multiperspective metapath for question routing.

Lingfei Qian, Jian Wang, Hongfei Lin, Bo Xu, Liang Yang

Knowl. Based Syst., 2022

A multi-view network for real-time emotion recognition in conversations.

Hui Ma, Jian Wang, Hongfei Lin, Xuejun Pan, Yijia Zhang, Zhihao Yang

Knowl. Based Syst., 2022

MRC4BioER: Joint extraction of biomedical entities and relations in the machine reading comprehension framework.

Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

J. Biomed. Informatics, 2022

Dependency multi-weight-view graphs for event detection with label co-occurrence.

Yan Wang, Jian Wang, Hongfei Lin, Yijia Zhang, Zhihao Yang

Inf. Sci., 2022

Manifold biomedical text sentence embedding.

Bolin Wang, Yuanyuan Sun, Yonghe Chu, Hongfei Lin, Di Zhao, Liang Yang, Chen Shen, Zhihao Yang, Jian Wang

Neurocomputing, 2022

Multi-hop interactive attention based classification network for expert recommendation.

Lingfei Qian, Jian Wang, Hongfei Lin, Liang Yang, Yu Zhang

Neurocomputing, 2022

Global and local interaction matching model for knowledge-grounded response selection in retrieval-based chatbots.

Hui Ma, Jian Wang, Hongfei Lin, Liang Yang

Neurocomputing, 2022

Refining electronic medical records representation in manifold subspace.

Bolin Wang, Yuanyuan Sun, Yonghe Chu, Di Zhao, Zhihao Yang, Jian Wang

BMC Bioinform., 2022

NIDN: Medical Code Assignment via Note-Code Interaction Denoising Network.

Xiaobo Li, Yijia Zhang, Xingwang Li, Jian Wang, Mingyu Lu

Proceedings of the Bioinformatics Research and Applications - 18th International Symposium, 2022

Two Languages Are Better than One: Bilingual Enhancement for Chinese Named Entity Recognition.

Jinzhong Ning, Zhihao Yang, Zhizheng Wang, Yuanyuan Sun, Hongfei Lin, Jian Wang

Proceedings of the 29th International Conference on Computational Linguistics, 2022

RealMedDial: A Real Telemedical Dialogue Dataset Collected from Online Chinese Short-Video Clips.

Bo Xu, Hongtong Zhang, Jian Wang, Xiaokun Zhang, Dezhi Hao, Linlin Zong, Hongfei Lin, Fenglong Ma

Proceedings of the 29th International Conference on Computational Linguistics, 2022

Adaptive Multi-view Graph Convolutional Network for Gene Ontology Annotations of Proteins.

Yingwen Zhao, Zhihao Yang, Yongkai Hong, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Location-Guided Token Pair Tagger for Joint Biomedical Entity and Relation Extraction.

Yan Zhang, Jiru Li, Zhihao Yang, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

BioNER-CFEM: Biomedical Named Entity Recognition Based on Character Feature Enhancement with Multimodal Method.

Jinzhong Ning, Jiru Li, Zhihao Yang, Yuanyuan Sun, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Knowledge-Enhanced Dual Graph Neural Network for Robust Medicine Recommendation.

Xingwang Li, Yijia Zhang, Jian Wang, Mingyu Lu, Hongfei Lin

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Patient Condition Change Network for Safe Medication Recommendation.

Ruobing Li, Jian Wang, Hongfei Lin, Yuan Lin, Huiyi Lu, Zhihao Yang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Syntactic Type-aware Graph Attention Network for Drug-drug Interactions and their Adverse Effects Extraction.

Peng Chen, Jian Wang, Hongfei Lin, Yichen Wang, Di Zhao, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

Lexicon Knowledge Boosted Interaction Graph Network for Adverse Drug Reaction Recognition From Social Media.

Zhiheng Li, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

IEEE J. Biomed. Health Informatics, 2021

Hierarchical matching network for multi-turn response selection in retrieval-based chatbots.

Hui Ma, Jian Wang, Hongfei Lin, Yi-Jia Zhang

Soft Comput., 2021

HAN-ReGRU: hierarchical attention network with residual gated recurrent unit for emotion recognition in conversation.

Hui Ma, Jian Wang, Lingfei Qian, Hongfei Lin

Neural Comput. Appl., 2021

Medical code prediction via capsule networks and ICD knowledge.

Weidong Bao, Hongfei Lin, Yi-Jia Zhang, Jian Wang, Shaowu Zhang

BMC Medical Informatics Decis. Mak., 2021

Sentence representation with manifold learning for biomedical texts.

Di Zhao, Jian Wang, Hongfei Lin, Yonghe Chu, Yan Wang, Yi-Jia Zhang, Zhihao Yang

Knowl. Based Syst., 2021

Adversarial neural network with sentiment-aware attention for detecting adverse drug reactions.

Tongxuan Zhang, Hongfei Lin, Bo Xu, Liang Yang, Jian Wang, Xiaodong Duan

J. Biomed. Informatics, 2021

Biomedical named entity recognition using BERT in the machine reading comprehension framework.

Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

J. Biomed. Informatics, 2021

Improving biomedical word representation with locally linear embedding.

Di Zhao, Jian Wang, Yonghe Chu, Yijia Zhang, Zhihao Yang, Hongfei Lin

Neurocomputing, 2021

Identifying adverse drug reaction entities from social media with adversarial transfer learning model.

Tongxuan Zhang, Hongfei Lin, Yuqi Ren, Zhihao Yang, Jian Wang, Xiaodong Duan, Bo Xu

Neurocomputing, 2021

Deep learning with language models improves named entity recognition for PharmaCoNER.

Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

BMC Bioinform., 2021

Biomedical cross-sentence relation extraction via multihead attention and graph convolutional networks.

Di Zhao, Jian Wang, Hongfei Lin, Xin Wang, Zhihao Yang, Yijia Zhang

Appl. Soft Comput., 2021

Adversarial transfer network with bilinear attention for the detection of adverse drug reactions from social media.

Tongxuan Zhang, Hongfei Lin, Yuqi Ren, Zhihao Yang, Jian Wang, Shaowu Zhang, Bo Xu, Xiaodong Duan

Appl. Soft Comput., 2021

Focus on Interaction: A Novel Dynamic Graph Model for Joint Multiple Intent Detection and Slot Filling.

Zeyuan Ding, Zhihao Yang, Hongfei Lin, Jian Wang

Proceedings of the Thirtieth International Joint Conference on Artificial Intelligence, 2021

Auto-learning Convolution-Based Graph Convolutional Network for Medical Relation Extraction.

Mengyuan Qian, Jian Wang, Hongfei Lin, Di Zhao, Yijia Zhang, Wentai Tang, Zhihao Yang

Proceedings of the Information Retrieval - 27th China Conference, 2021

TL-BERT: A Novel Biomedical Relation Extraction Approach.

Zhehuan Zhao, Yuying Zou, Yang Tian, Bo Xu, Zhihao Yang, Jian Wang, Hongfei Lin, Shimin Shan, Yu Liu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Self-Supervised Learning with Heterogeneous Graph Neural Network for COVID-19 Drug Recommendation.

Haifeng Liu, Hongfei Lin, Chen Shen, Zhihao Yang, Jian Wang, Liang Yang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Co-Attentive Span Network with Multi-task learning for Biomedical Named Entity Recognition.

Peng Chen, Jian Wang, Hongfei Lin, Yijia Zhang, Zhihao Yang, Di Zhao, Hui Ma

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

KGHC: a knowledge graph for hepatocellular carcinoma.

Nan Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

BMC Medical Informatics Decis. Mak., 2020

Attention guided capsule networks for chemical-protein interaction extraction.

Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

J. Biomed. Informatics, 2020

FBSN: A hybrid fine-grained neural network for biomedical event trigger identification.

Yufeng Diao, Hongfei Lin, Liang Yang, Xiaochao Fan, Di Wu, Zhihao Yang, Jian Wang, Kan Xu

Neurocomputing, 2020

Incorporating representation learning and multihead attention to improve biomedical cross-sentence n-ary relation extraction.

Di Zhao, Jian Wang, Yi-Jia Zhang, Xin Wang, Hongfei Lin, Zhihao Yang

BMC Bioinform., 2020

Biomedical document triage using a hierarchical attention-based capsule network.

Jian Wang, Mengying Li, Qishuai Diao, Hongfei Lin, Zhihao Yang, Yi-Jia Zhang

BMC Bioinform., 2020

Chemical-protein interaction extraction via Gaussian probability distribution and external biomedical knowledge.

Cong Sun, Zhihao Yang, Leilei Su, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

Bioinform., 2020

Interactive Self-Attentive Siamese Network for Biomedical Sentence Similarity.

Zhengguang Li, Hongfei Lin, Wei Zheng, Michael M. Tadesse, Zhihao Yang, Jian Wang

IEEE Access, 2020

Gated iterative capsule network for adverse drug reaction detection from social media.

Tongxuan Zhang, Hongfei Lin, Bo Xu, Yuqi Ren, Zhihao Yang, Jian Wang, Xiaodong Duan

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Star-BiLSTM-LAN for Document-level Mutation-Disease Relation Extraction from Biomedical Literature.

Yuan Xu, Zhihao Yang, Yawen Song, Zhiheng Li, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Extracting biomedical relations via a multi-head attention based graph convolutional network.

Erniu Wang, Fan Wang, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Extracting Protein-Protein Interactions Affected by Mutations via Auxiliary Task and Domain Pre-trained Model.

Yu Wang, Shaowu Zhang, Yijia Zhang, Jian Wang, Hongfei Lin

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Drug Repositioning for SARS-CoV-2 Based on Graph Neural Network.

Haifeng Liu, Hongfei Lin, Chen Shen, Liang Yang, Yuan Lin, Bo Xu, Zhihao Yang, Jian Wang, Yuanyuan Sun

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Cross2Self-attentive Bidirectional Recurrent Neural Network with BERT for Biomedical Semantic Text Similarity.

Zhengguang Li, Hongfei Lin, Chen Shen, Wei Zheng, Zhihao Yang, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019

Detecting adverse drug reactions from social media based on multi-channel convolutional neural networks.

Chen Shen, Hongfei Lin, Kai Guo, Kan Xu, Zhihao Yang, Jian Wang

Neural Comput. Appl., 2019

Relation path feature embedding based convolutional neural network method for drug discovery.

Di Zhao, Jian Wang, Shengtian Sang, Hongfei Lin, Jiabin Wen, Chunmei Yang

BMC Medical Informatics Decis. Mak., 2019

Intelligent multi-document summarization for biomedical literature by word embeddings and graph-based ranking.

Chen Shen, Hongfei Lin, Huihui Hao, Zhihao Yang, Jian Wang, Shaowu Zhang

J. Intell. Fuzzy Syst., 2019

Extracting drug-drug interactions with hybrid bidirectional gated recurrent unit and graph convolutional network.

Di Zhao, Jian Wang, Hongfei Lin, Zhihao Yang, Yijia Zhang

J. Biomed. Informatics, 2019

Neural network-based approaches for biomedical relation classification: A review.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yuanyuan Sun, Bo Xu, Zhehuan Zhao

J. Biomed. Informatics, 2019

Chemical-protein interaction extraction from biomedical literature: a hierarchical recurrent convolutional neural network method.

Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang

Int. J. Data Min. Bioinform., 2019

KeSACNN: a protein-protein interaction article classification approach based on deep neural network.

Ling Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

Int. J. Data Min. Bioinform., 2019

Improving User Attribute Classification with Text and Social Network Attention.

Yumeng Li, Liang Yang, Bo Xu, Jian Wang, Hongfei Lin

Cogn. Comput., 2019

Adverse drug reaction detection via a multihop self-attention mechanism.

Tongxuan Zhang, Hongfei Lin, Yuqi Ren, Liang Yang, Bo Xu, Zhihao Yang, Jian Wang, Yijia Zhang

BMC Bioinform., 2019

A supervised term ranking model for diversity enhanced biomedical information retrieval.

Bo Xu, Hongfei Lin, Liang Yang, Kan Xu, Yi-Jia Zhang, Dongyu Zhang, Zhihao Yang, Jian Wang, Yuan Lin, Fuliang Yin

BMC Bioinform., 2019

Chemical-protein interaction extraction via contextualized word representations and multihead attention.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yuanyuan Sun

Database J. Biol. Databases Curation, 2019

Biomedical event trigger detection with convolutional highway neural network and extreme learning machine.

Chen Shen, Hongfei Lin, Xiaochao Fan, Yonghe Chu, Zhihao Yang, Jian Wang, Shaowu Zhang

Appl. Soft Comput., 2019

Detection of protein complexes from multiple protein interaction networks using graph embedding.

Xiaoxia Liu, Zhihao Yang, Shengtian Sang, Hongfei Lin, Jian Wang, Bo Xu

Artif. Intell. Medicine, 2019

A Deep Learning Approach With Deep Contextualized Word Representations for Chemical-Protein Interaction Extraction From Biomedical Literature.

Cong Sun, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

IEEE Access, 2019

GrEDeL: A Knowledge Graph Embedding Based Method for Drug Discovery From Biomedical Literatures.

Shengtian Sang, Zhihao Yang, Xiaoxia Liu, Lei Wang, Hongfei Lin, Jian Wang, Michel Dumontier

IEEE Access, 2019

DUTIR at TREC 2019: Precision Medicine Track.

Jingkun Feng, Zhihao Yang, Zhiqiang Liu, Ling Luo, Hongfei Lin, Jian Wang

Proceedings of the Twenty-Eighth Text REtrieval Conference, 2019

Bi-directional Capsule Network Model for Chinese Biomedical Community Question Answering.

Tongxuan Zhang, Yuqi Ren, Michael Mesfin Tadessem, Bo Xu, Xikai Liu, Liang Yang, Zhihao Yang, Jian Wang, Hongfei Lin

Proceedings of the Natural Language Processing and Chinese Computing, 2019

Residual Connected Enhanced Sequential Inference Model for Natural Language Inference.

Yingdong Li, Jian Wang, Hongfei Lin, Shaowu Zhang, Zhihao Yang

Proceedings of the 14th IEEE International Conference on Intelligent Systems and Knowledge Engineering, 2019

Disease Gene Prediction Based on Heterogeneous Probabilistic Hypergraph Ranking.

Feng Ding, Xiangjie Kong, Zhehuan Zhao, Feng Xia, Anfu Liu, Chenxu Bai, Bo Xu, Xiaoxia Liu, Shengtian Sang, Hongfei Lin, Zhihao Yang, Jian Wang

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018

Improve Biomedical Information Retrieval Using Modified Learning to Rank Methods.

Bo Xu, Hongfei Lin, Yuan Lin, Yunlong Ma, Liang Yang, Jian Wang, Zhihao Yang

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Exploring Answer Information for Question Classification in Community Question Answering.

Jian Wang, Hongfei Lin, Hualei Dong, Daping Xiong, Zhihao Yang

J. Multiple Valued Log. Soft Comput., 2018

A neural network approach to chemical and gene/protein entity recognition in patents.

Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Jian Wang, Hongfei Lin

J. Cheminformatics, 2018

An effective neural model extracting document level chemical-induced disease relations from biomedical literature.

Wei Zheng, Hongfei Lin, Zhiheng Li, Xiaoxia Liu, Zhengguang Li, Bo Xu, Yijia Zhang, Zhihao Yang, Jian Wang

J. Biomed. Informatics, 2018

A hybrid model based on neural networks for biomedical relation extraction.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Shaowu Zhang, Yuanyuan Sun, Liang Yang

J. Biomed. Informatics, 2018

Bidirectional long short-term memory with CRF for detecting biomedical event trigger in FastText semantic space.

Yan Wang, Jian Wang, Hongfei Lin, Xiwei Tang, Shaowu Zhang, Lishuang Li

BMC Bioinform., 2018

SemaTyP: a knowledge graph based literature mining method for drug discovery.

Shengtian Sang, Zhihao Yang, Lei Wang, Xiaoxia Liu, Hongfei Lin, Jian Wang

BMC Bioinform., 2018

Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks.

Xiaoxia Liu, Zhihao Yang, Shengtian Sang, Ziwei Zhou, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Bo Xu

BMC Bioinform., 2018

Biomedical event extraction based on GRU integrating attention mechanism.

Lishuang Li, Jia Wan, Jieqiong Zheng, Jian Wang

BMC Bioinform., 2018

Drug-drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths.

Yijia Zhang, Wei Zheng, Hongfei Lin, Jian Wang, Zhihao Yang, Michel Dumontier

Bioinform., 2018

An attention-based BiLSTM-CRF approach to document-level chemical named entity recognition.

Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang

Bioinform., 2018

Document triage for identifying protein-protein interactions affected by mutations: a neural network ensemble approach.

Ling Luo, Zhihao Yang, Hongfei Lin, Jian Wang

Database J. Biol. Databases Curation, 2018

A Normalized Encoder-Decoder Model for Abstractive Summarization Using Focal Loss.

Yunsheng Shi, Jun Meng, Jian Wang, Hongfei Lin, Yumeng Li

Proceedings of the Natural Language Processing and Chinese Computing, 2018

NLPCC 2018 Shared Task User Profiling and Recommendation Method Summary by DUTIR_9148.

Xiaoyu Chen, Jian Wang, Yuqi Ren, Tong Liu, Hongfei Lin

Proceedings of the Natural Language Processing and Chinese Computing, 2018

WECA：A WordNet-Encoded Collocation-Attention Network for Homographic Pun Recognition.

Yufeng Diao, Hongfei Lin, Di Wu, Liang Yang, Kan Xu, Zhihao Yang, Jian Wang, Shaowu Zhang, Bo Xu, Dongyu Zhang

Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, Brussels, Belgium, October 31, 2018

Chinese Emotion Commonsense Knowledge Base Construction and Its Application.

Liang Yang, Fengqing Zhou, Hongfei Lin, Jian Wang, Shaowu Zhang

Proceedings of the Chinese Lexical Semantics - 19th Workshop, 2018

Full-attention Based Drug Drug Interaction Extraction Exploiting User-generated Content.

Bo Xu, Xiufeng Shi, Zhehuan Zhao, Wei Zheng, Hongfei Lin, Zhihao Yang, Jian Wang, Feng Xia

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Multipath2vec: Predicting Pathogenic Genes via Heterogeneous Network Embedding.

Bo Xu, Yu Liu, Shuo Yu, Lei Wang, Lei Liu, Hongfei Lin, Zhihao Yang, Jian Wang, Feng Xia

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Protein Complexes Detection Based on Global Network Representation Learning.

Bo Xu, Kun Li, Xiaoxia Liu, Delong Liu, Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Feng Xia

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Hierarchical Recurrent Convolutional Neural Network for Chemical-protein Relation Extraction from Biomedical Literature.

Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A Knowledge Graph based Bidirectional Recurrent Neural Network Method for Literature-based Discovery.

Shengtian Sang, Zhihao Yang, Xiaoxia Liu, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Protein-Protein Interaction Article Classification: A Knowledge-enriched Self-Attention Convolutional Neural Network Approach.

Ling Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

PC-SENE: A node embedding based method for protein complex detection.

Xiaoxia Liu, Zhihao Yang, Shengtian Sang, Lei Wang, Yin Zhang, Hongfei Lin, Bo Xu, Yijia Zhang, Liang Yang, Kan Xu, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

HMNPPID: A Database of Protein-protein Interactions Associated with Human Malignant Neoplasms.

Qingqing Li, Zhihao Yang, Zhehuan Zhao, Ling Luo, Zhiheng Li, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A multi-task learning based approach to biomedical entity relation extraction.

Qingqing Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Improve Diversity-oriented Biomedical Information Retrieval using Supervised Query Expansion.

Bo Xu, Hongfei Lin, Liang Yang, Kan Xu, Yijia Zhang, Dongyu Zhang, Zhihao Yang, Jian Wang, Yuan Lin, Fuliang Yin

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017

A multiple distributed representation method based on neural network for biomedical event extraction.

Anran Wang, Jian Wang, Hongfei Lin, Jianhai Zhang, Zhihao Yang, Kan Xu

BMC Medical Informatics Decis. Mak., 2017

Chord: Checkpoint-based scheduling using hybrid waiting list in shared clusters.

Yiyang Shao, Weidong Bao, Xiaomin Zhu, Wenhua Xiao, Jian Wang

J. Syst. Softw., 2017

Convolutional neural networks for expert recommendation in community question answering.

Jian Wang, Jiqing Sun, Hongfei Lin, Hualei Dong, Shaowu Zhang

Sci. China Inf. Sci., 2017

An attention-based effective neural model for drug-drug interactions extraction.

Wei Zheng, Hongfei Lin, Ling Luo, Zhehuan Zhao, Zhengguang Li, Yijia Zhang, Zhihao Yang, Jian Wang

BMC Bioinform., 2017

First Place Solution for NLPCC 2017 Shared Task Social Media User Modeling.

Lingfei Qian, Anran Wang, Yan Wang, Yuhang Huang, Jian Wang, Hongfei Lin

Proceedings of the Natural Language Processing and Chinese Computing, 2017

Detecting Potential Adverse Drug Reactions Using Association Rules and Embedding Models.

Kai Guo, Hongfei Lin, Bo Xu, Zhihao Yang, Jian Wang, Yuanyuan Sun, Kan Xu

Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

Biomedical event trigger detection based on bidirectional LSTM and CRF.

Yan Wang, Jian Wang, Hongfei Lin, Shaowu Zhang, Lishuang Li

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016

A graph kernel based on context vectors for extracting drug-drug interactions.

Wei Zheng, Hongfei Lin, Zhehuan Zhao, Bo Xu, Yijia Zhang, Zhihao Yang, Jian Wang

J. Biomed. Informatics, 2016

A protein-protein interaction extraction approach based on deep neural network.

Zhehuan Zhao, Zhihao Yang, Hongfei Lin, Jian Wang, Song Gao

Int. J. Data Min. Bioinform., 2016

Biomedical event trigger detection based on convolutional neural network.

Jian Wang, Honglei Li, Yuan An, Hongfei Lin, Zhihao Yang

Int. J. Data Min. Bioinform., 2016

A method for predicting protein complex in dynamic PPI networks.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yiwei Liu, Shengtian Sang

BMC Bioinform., 2016

Construction of dynamic probabilistic protein interaction networks for protein complex identification.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang

BMC Bioinform., 2016

Drug drug interaction extraction from biomedical literature using syntax convolutional neural network.

Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang

Bioinform., 2016

Generating User-oriented Text Summarization Based on Social Networks Using Topic Models.

Bo Xu, Hongfei Lin, Huihui Hao, Zhihao Yang, Jian Wang, Shaowu Zhang

Proceedings of the Social Media Processing - 5th National Conference, 2016

Predicting Best Answerers for New Questions: An Approach Leveraging Convolution Neural Networks in Community Question Answering.

Jian Wang, Jiqing Sun, Hongfei Lin, Hualei Dong, Shaowu Zhang

Proceedings of the Social Media Processing - 5th National Conference, 2016

Detecting Potential Adverse Drug Reactions from Health-Related Social Networks.

Bo Xu, Hongfei Lin, Mingzhen Zhao, Zhihao Yang, Jian Wang, Shaowu Zhang

Proceedings of the Natural Language Understanding and Intelligent Applications, 2016

DUTIR in BioNLP-ST 2016: Utilizing Convolutional Network and Distributed Representation to Extract Complicate Relations.

Honglei Li, Jianhai Zhang, Jian Wang, Hongfei Lin, Zhihao Yang

Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, 2016

Disease-specific protein complex detection in the human protein interaction network with a supervised learning method.

Ziwei Zhou, Yingyi Gui, Zhihao Yang, Xiaoxia Liu, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

ML-CNN: A novel deep learning based disease named entity recognition architecture.

Zhehuan Zhao, Zhihao Yang, Ling Luo, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

Biomedical event extraction based on distributed representation and deep learning.

Anran Wang, Jian Wang, Hongfei Lin, Jianhai Zhang, Zhihao Yang, Kan Xu

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

CIDExtractor: A chemical-induced disease relation extraction system for biomedical literature.

Zhiheng Li, Zhihao Yang, Hongfei Lin, Jian Wang, Yingyi Gui, Yin Zhang, Lei Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015

Protein complex detection in PPI networks based on data integration and supervised learning method.

Fengying Yu, Zhihao Yang, Xiaohua Hu, Yuanyuan Sun, Hongfei Lin, Jian Wang

BMC Bioinform., December, 2015

Integrating experimental and literature protein-protein interaction data for protein complex prediction.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang

BMC Genom., 2015

Predicting Best Answerers for New Questions: An Approach Leveraging Distributed Representations of Words in Community Question Answering.

Hualei Dong, Jian Wang, Hongfei Lin, Bo Xu, Zhihao Yang

Proceedings of the Ninth International Conference on Frontier of Computer Science and Technology, 2015

Deep neural network based protein-protein interaction extraction from biomedical literature.

Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang, Song Gao

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Discover potential adverse drug reactions using the skip-gram model.

Mingzhen Zhao, Bo Xu, Hongfei Lin, Zhihao Yang, Jian Wang

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Learning to rank for biomedical information retrieval.

Bo Xu, Hongfei Lin, Yuan Lin, Yunlong Ma, Liang Yang, Jian Wang, Zhihao Yang

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

Biomedical event trigger detection by dependency-based word embedding.

Jian Wang, Jianhai Zhang, Yuan An, Hongfei Lin, Zhihao Yang, Yijia Zhang, Yuanyuan Sun

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

Predicting protein complex in protein interaction network - a supervised learning based method.

Feng Yu, Zhi-Hao Yang, Nan Tang, Hong Lin, Jian Wang, Zhiwei Yang

BMC Syst. Biol., 2014

Enhancing the accuracy of knowledge discovery: a supervised learning method.

Liangxi Cheng, Hongfei Lin, Feng Zhou, Zhihao Yang, Jian Wang

BMC Bioinform., 2014

Data integration and supervised learning based protein complex detection method.

Fengying Yu, Zhihao Yang, Xiaohua Hu, Yuanyuan Sun, Hongfei Lin, Jian Wang

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Deep graph search based disease related knowledge summarization from biomedical literature.

Xiaofang Wu, Zhihao Yang, Zhiheng Li, Yuanyuan Sun, Hongfei Lin, Jian Wang

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

Exploring the relation between the characteristics of protein interaction networks and the performances of computational complex detection methods.

Xiaoxia Liu, Zhihao Yang, Ziwei Zhou, Yuanyuan Sun, Hongfei Lin, Jian Wang

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013

Protein Complex Prediction in Large Ontology Attributed Protein-Protein Interaction Networks.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yanpeng Li, Bo Xu

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

Exploring Useful Features for Biomedical Event Trigger Detection.

Jian Wang, Qian Xu, Hongfei Lin, Zhihao Yang, Yanpeng Li

J. Multiple Valued Log. Soft Comput., 2013

Integrating multiple biomedical resources for protein complex prediction.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Bo Xu

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

Predicting protein complexes in protein interaction networks: A supervised learning based method.

Fengying Yu, Zhihao Yang, Nan Tang, Jiajin Wu, Hongfei Lin, Jian Wang

Proceedings of the 2013 IEEE International Conference on Bioinformatics and Biomedicine, 2013

2012

Hash Subgraph Pairwise Kernel for Protein-Protein Interaction Extraction.

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yanpeng Li

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Combining labeled and unlabeled data for biomédical event extraction.

Jian Wang, Qian Xu, Hongfei Lin, Zhihao Yang, Yanpeng Li

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

2011

Identifying Protein Complexes from PPI Networks Using GO Semantic Similarity.

Jian Wang, Dong Xie, Hongfei Lin, Zhihao Yang, Yijia Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011