Mapping the genetic architecture of complex traits in experimental populations. - Jian Yang 005; Jun Zhu; Robert W. Williams (Bioinform., 2007)

QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations. - Jian Yang 005; Chengcheng Hu; Han Hu 002; Rongdong Yu; Zhen Xia; Xiuzi Ye; Jun Zhu (Bioinform., 2008)

Estimation of pleiotropy between complex diseases using single-nucleotide polymorphism-derived genomic relationships and restricted maximum likelihood. - Sang Hong Lee; Jian Yang 005; M. E. Goddard; Peter M. Visscher; Naomi R. Wray (Bioinform., 2012)

Efficient Estimation and Applications of Cross-Validated Genetic Predictions. - Joel Mefford; Danny S. Park; Zhili Zheng; Arthur Ko; Mika Ala-Korpela; Markku Laakso; Paivi Pajukanta; Jian Yang 005; John S. Witte; Noah Zaitlen (RECOMB, 2019)

Linear Mixed Models Minimise False Positive Rate and Enhance Precision of Mass Univariate Vertex-Wise Analyses of Grey-Matter. - Baptiste Couvy-Duchesne; Futao Zhang; Kathryn E. Kemper; Julia Sidorenko; Naomi R. Wray; Peter M. Visscher; Olivier Colliot; Jian Yang 005 (ISBI, 2020)

Efficient Estimation and Applications of Cross-Validated Genetic Predictions to Polygenic Risk Scores and Linear Mixed Models. - Joel Mefford; Danny S. Park; Zhili Zheng; Arthur Ko; Mika Ala-Korpela; Markku Laakso; Päivi Pajukanta; Jian Yang 005; John S. Witte; Noah Zaitlen (J. Comput. Biol., 2020)

Association and prediction of phenotypic traits from neuroimaging data using a multi-component mixed model excluding the target vertex. - Baptiste Couvy-Duchesne; Futao Zhang; Kathryn E. Kemper; Julia Sidorenko; Naomi R. Wray; Peter M. Visscher; Jian Yang 005; Olivier Colliot (Image Processing, 2021)

Mixed model-based deconvolution of cell-state abundances (MeDuSA) along a one-dimensional trajectory. - Liyang Song; Xiwei Sun; Ting Qi; Jian Yang 005 (Nat. Comput. Sci., 2023)

Deep learning approaches for non-coding genetic variant effect prediction: current progress and future prospects. - Xiaoyu Wang 016; Fuyi Li; Yiwen Zhang; Seiya Imoto; Hsin-Hui Shen; Shanshan Li; Yuming Guo 001; Jian Yang 005; Jiangning Song (Briefings Bioinform., 2024)

Highly accurate classification and discovery of microbial protein-coding gene functions using FunGeneTyper: an extensible deep learning framework. - Guoqing Zhang; Hui Wang; Zhiguo Zhang; Lu Zhang; Guibing Guo; Jian Yang 005; Fajie Yuan; Feng Ju (Briefings Bioinform., 2024)