An improved convex and concave index for revealing the exposure degree of atoms in protein 3D structure. - Xiao Wang 016; Jian Zhao 034; Yujiao Yan; Jingye Qian; Ping Han; Xiaofeng Song (Int. J. Comput. Biol. Drug Des., 2017)

Correction to: circular RNA expression profiles during the differentiation of mouse neural stem cells. - Qichang Yang; Jing Wu; Jian Zhao 034; Tianyi Xu; Zhongming Zhao; Xiaofeng Song; Ping Han (BMC Syst. Biol., 2019)

IRESbase: A Comprehensive Database of Experimentally Validated Internal Ribosome Entry Sites. - Jian Zhao 034; Yan Li 071; Cong Wang 028; Haotian Zhang; Hao Zhang 080; Bin Jiang 001; Xuejiang Guo; Xiaofeng Song (Genom. Proteom. Bioinform., 2020)

pHisPred: a tool for the identification of histidine phosphorylation sites by integrating amino acid patterns and properties. - Jian Zhao 034; Minhui Zhuang; Jingjing Liu; Meng Zhang; Cong Zeng; Bin Jiang 001; Jing Wu; Xiaofeng Song (BMC Bioinform., 2022)

csORF-finder: an effective ensemble learning framework for accurate identification of multi-species coding short open reading frames. - Meng Zhang; Jian Zhao 034; Chen Li 021; Fang Ge; Jing Wu; Bin Jiang 001; Jiangning Song; Xiaofeng Song (Briefings Bioinform., 2022)

A Statistical Explainable Learning Model Optimizing Co-localization of Multidimensional Positivity Thresholds in Immunotherapy Decision-Supporting. - Yixuan Wang; Jingjing Liu; Jian Zhao 034; Jiayin Wang; Quan Wang; Xiaofeng Song (BIBM, 2023)

In-depth characterization and identification of translatable lncRNAs. - Meng Zhang; Jian Zhao 034; Jing Wu; Yulan Wang; Minhui Zhuang; Lingxiao Zou; Renlong Mao; Bin Jiang 001; Jingjing Liu; Xiaofeng Song (Comput. Biol. Medicine, 2023)

Genome-wide perturbations of A-to-I RNA editing dysregulated circular RNAs promoting the development of cervical cancer. - Yulan Wang; Jian Zhao 034; Jing Wu; Jingjing Liu; Yixuan Wang; Tianyi Xu; Meng Zhang; Minhui Zhuang; Lingxiao Zou; Wei Sun; Ping Han; Xiaofeng Song (Comput. Biol. Medicine, 2023)

THOR: a TMB heterogeneity-adaptive optimization model predicts immunotherapy response using clonal genomic features in group-structured data. - Yixuan Wang; Yanfang Guan; Xin Lai; Yuqian Liu; Zhili Chang; Xiaonan Wang; Quan Wang; Jingjing Liu; Jian Zhao 034; Shuanying Yang; Jiayin Wang; Xiaofeng Song (Briefings Bioinform., 2024)

DeepIRES: a hybrid deep learning model for accurate identification of internal ribosome entry sites in cellular and viral mRNAs. - Jian Zhao 034; Zhewei Chen; Meng Zhang; Lingxiao Zou; Shan He; Jingjing Liu; Quan Wang; Xiaofeng Song; Jing Wu (Briefings Bioinform., 2024)