PRAS: Predicting functional targets of RNA binding proteins based on CLIP-seq peaks. - Jianan Lin 002; Yuping Zhang; Wayne N. Frankel; Zhengqing Ouyang (PLoS Comput. Biol., 2019)

Large-scale analysis of the position-dependent binding and regulation of human RNA binding proteins. - Jianan Lin 002; Zhengqing Ouyang (Quant. Biol., 2020)

Differential RNA methylation using multivariate statistical methods. - Deepak Nag Ayyala; Jianan Lin 002; Zhengqing Ouyang (Briefings Bioinform., 2022)

Deciphering the role of RNA structure in translation efficiency. - Jianan Lin 002; Yang Chen 004; Yuping Zhang; Haifan Lin; Zhengqing Ouyang (BMC Bioinform., 2022)