RAM Grid Middleware for Autonomic Cooperative Caching. - Rui Chu; Jiancong Xie; Nong Xiao; Xicheng Lu (GCC, 2007)

Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion. - Qianmu Yuan; Junjie Xie; Jiancong Xie; Huiying Zhao; Yuedong Yang (Briefings Bioinform., 2023)

From intuition to AI: evolution of small molecule representations in drug discovery. - Miles McGibbon; Steven R. Shave; Jie Dong; Yumiao Gao; Douglas R. Houston; Jiancong Xie; Yuedong Yang; Philippe Schwaller; Vincent Blay (Briefings Bioinform., 2023)

Interpretable Drug Response Prediction through Molecule Structure-aware and Knowledge-Guided Visible Neural Network. - Jiancong Xie; Zhe Zhang; Youyou Li; Jiahua Rao; Yuedong Yang (BIBM, 2024)

Incorporating Retrieval-based Causal Learning with Information Bottlenecks for Interpretable Graph Neural Networks. - Jiahua Rao; Jiancong Xie; Hanjing Lin; Shuangjia Zheng; Zhen Wang 036; Yuedong Yang (CoRR, 2024)

Self-Supervised Contrastive Molecular Representation Learning with a Chemical Synthesis Knowledge Graph. - Jiancong Xie; Yi Wang; Jiahua Rao; Shuangjia Zheng; Yuedong Yang (J. Chem. Inf. Model., 2024)

Predicting disease-gene associations through self-supervised mutual infomax graph convolution network. - Jiancong Xie; Jiahua Rao; Junjie Xie; Huiying Zhao; Yuedong Yang (Comput. Biol. Medicine, 2024)

Multi-modal Contrastive Learning with Negative Sampling Calibration for Phenotypic Drug Discovery. - Jiahua Rao; Hanjing Lin; Leyu Chen; Jiancong Xie; Shuangjia Zheng; Yuedong Yang (CVPR, 2025)

A 3D pocket-aware lead optimization model with knowledge guidance and its application for discovery of new glutaminyl cyclase inhibitors. - Anjie Qiao; Yuting Chen; Junjie Xie; Weifeng Huang; Hao Zhang; Qirui Deng; Jiahua Rao; Ji Deng; Fanbo Meng; Zhen Wang 004; Mingyuan Xu; Hongming Chen 001; et al. (Briefings Bioinform., 2025)