RiceSNP-BST: a deep learning framework for predicting biotic stress-associated SNPs in rice. - Jiajun Xu; Yujia Gao; Quan Lu; Renyi Zhang; Jianfeng Gui; Xiaoshuang Liu; Zhenyu Yue (Briefings Bioinform., 2024)

Controllable Edge-Type-Specific Interpretation in Multi-Relational Graph Neural Networks for Drug Response Prediction. - Xiaodi Li; Jianfeng Gui; Qian Gao; Haoyuan Shi; Zhenyu Yue (CoRR, 2024)

Comprehensive Assessment of BERT-Based Methods for Predicting Antimicrobial Peptides. - Wanling Gao; Jun Zhao; Jianfeng Gui; Zehan Wang; Jie Chen; Zhenyu Yue (J. Chem. Inf. Model., 2024)

Controllable Edge-Type-Specific Interpretation in Multi-relational Graph Neural Networks for Drug Response Prediction. - Xiaodi Li; Jianfeng Gui; Leyao Kang; Ranran Zhang; Jie Chen; Zhenyu Yue (ICIC (26), 2025)