HAPSIMU: a genetic simulation platform for population-based association studies. - Feng Zhang; Jianfeng Liu 003; Jie Chen 008; Hong-Wen Deng (BMC Bioinform., 2008)

A rapid epistatic mixed-model association analysis by linear retransformations of genomic estimated values. - Chao Ning 004; Dan Wang; Huimin Kang; Raphael Mrode; Lei Zhou 024; Shizhong Xu; Jianfeng Liu 003 (Bioinform., 2018)

Efficient multivariate analysis algorithms for longitudinal genome-wide association studies. - Chao Ning 004; Dan Wang; Lei Zhou 024; Julong Wei; Yuanxin Liu; Huimin Kang; Shengli Zhang; Xiang Zhou; Shizhong Xu; Jianfeng Liu 003 (Bioinform., 2019)

Mitochondrial DNA enrichment reduced NUMT contamination in porcine NGS analyses. - Dan Wang; Hai Xiang; Chao Ning 004; Hao Liu; Jianfeng Liu 003; Xingbo Zhao (Briefings Bioinform., 2020)

Rapid epistatic mixed-model association studies by controlling multiple polygenic effects. - Dan Wang; Hui Tang; Jianfeng Liu 003; Shizhong Xu; Qin Zhang; Chao Ning 004 (Bioinform., 2020)

Integrated hybrid de novo assembly technologies to obtain high-quality pig genome using short and long reads. - Heng Du; Chenguang Diao; Pengju Zhao; Lei Zhou 024; Jianfeng Liu 003 (Briefings Bioinform., 2021)

Mining Unknown Porcine Protein Isoforms by Tissue-based Map of Proteome Enhances Pig Genome Annotation. - Pengju Zhao; Xianrui Zheng; Ying Yu; Zhuocheng Hou; Chenguang Diao; Haifei Wang; Huimin Kang; Chao Ning 004; Junhui Li; Wen Feng; Wen Wang; George E. Liu; et al. (Genom. Proteom. Bioinform., 2021)

The First Crested Duck Genome Reveals Clues to Genetic Compensation and Crest Cushion Formation. - Guobin Chang; Xiaoya Yuan; Qixin Guo; Hao Bai; Xiaofang Cao; Meng Liu; Zhixiu Wang; Bichun Li; Shasha Wang; Yong Jiang; Zhiquan Wang; Yang Zhang; et al. (Genom. Proteom. Bioinform., 2023)

PIMFP: An accurate tool for the prediction of intramuscular fat percentage in live pigs using ultrasound images based on deep learning. - Zhen Liu; Heng Du; Feng-Dan Lao; Zhen-Cai Shen; Yi-Hang Lv; Lei Zhou 024; Li Jiang; Jianfeng Liu 003 (Comput. Electron. Agric., 2024)

MAGE: metafounders-assisted genomic estimation of breeding value, a novel additive-dominance single-step model in crossbreeding systems. - Yue Zhuo; Heng Du; Chenguang Diao; Weining Li; Lei Zhou 024; Li Jiang; Jicai Jiang; Jianfeng Liu 003 (Bioinform., 2024)