A General Data Grid: Framework and Implementation. - Wu Zhang; Jian Mei; Jiang Xie 003 (International Conference on Computational Science (4), 2006)

PSE-Bio: A Grid Enabled Problem Solving Environment for Bioinformatics. - Jiang Xie 003; Xiaobin Zhang; Wu Zhang (eScience, 2007)

A Data Grid System Oriented Biologic Data. - Jiang Xie 003; Wu Zhang; Jian Mei (Web Intelligence/IAT Workshops, 2007)

Studies of Agent Composition Model of PSE-Bio Workflow. - Jiang Xie 003; Yiwen Zhang; Wu Zhang; Guoyong Mao; Jian Mei (eScience, 2008)

SVG-Based Interactive Visualization of PSE-Bio. - Guoyong Mao; Jiang Xie 003 (HPCA (China), 2009)

A Method for Querying Conserved Subnetwork in a Large-Scale Biomolecular Network. - Jiang Xie 003; Weibing Feng; Shi-Hua Zhang; Songbei Li; Guoyong Mao; Luwen Zhang; Tieqiao Wen; Wu Zhang (HPCA (China), 2009)

An Integrated Computing Environment for Bio-Molecular Networks. - Jiang Xie 003; Guoyong Mao; Shilin Zhang; Wu Zhang (J. Convergence Inf. Technol., 2010)

A Querying Method with Feedback Mechanism for Protein Interaction Network. - Jiang Xie 003; Shi-Hua Zhang; Tieqiao Wen; Guangtai Ding; Shu Yu; Zhili Gu; Wu Zhang (HISB, 2011)

PRT-HMM: A Novel Hidden Markov Model for Protein Secondary Structure Prediction. - Wang Ding; Dongbo Dai; Jiang Xie 003; Huiran Zhang; Wu Zhang; Hao Xie (ACIS-ICIS, 2012)

Unobtrusive ambulatory estimation of knee joint angles during walking using gyroscope and accelerometer data - a preliminary evaluation study. - Mareike Schulze; Tsung-Han Liu; Jiang Xie 003; Wu Zhang; Klaus-Hendrik Wolf; Tilman Calliess; Henning Windhagen; Michael Marschollek (BHI, 2012)

Visual synchronization analysis of simple color stimuli. - Huiran Zhang; Jiang Xie 003; Michael Marschollek; Mareike Schulze; Zheng Tang; Wu Zhang (BHI, 2012)

A network clustering algorithm for detection of protein families. - Jiang Xie 003; Minchao Wang; Dongbo Dai; Huiran Zhang; Wu Zhang (EMBC, 2012)

Efficient Range Queries over Uncertain Strings. - Dongbo Dai; Jiang Xie 003; Huiran Zhang; Jiaqi Dong (SSDBM, 2012)

A Web-oriented Framework for Graph Simplification and Interactive Visualization. - Guoyong Mao; Ning Zhang; Jiang Xie 003 (J. Comput., 2013)

A Fast Training Method for Transductive Support Vector Machine in Semi-supervised Learning. - Kai Lu; Jiang Xie 003; Junhui Shu (HPCA (China), 2015)

Prediction on Performance of Age Group Swimming Using Machine Learning. - Jiang Xie 003; Junfu Xu; Celine Nie; Qing Nie (HPCA (China), 2015)

Discovery of functional module alignment. - Jiang Xie 003; Chaojuan Xiang; Junfu Xu; Wu Zhang; Jiao Wang (Neurocomputing, 2016)

Directed Hungary Greedy Algorithm for Biomolecular Networks Alignment. - Jiang Xie 003; Jiaxin Li; Dongfang Lu; Jiao Wang; Wu Zhang (BIBE, 2017)

A global biomolecular network alignment method based on network flow model. - Jiang Xie 003; Jiaxin Li; Jiao Wang; Qing Nie; Wu Zhang (BIBM, 2017)

A novel hybrid subset-learning method for predicting risk factors of atherosclerosis. - Jiang Xie 003; Haitao Wang; Jiyuan Zhang; Chao Meng; Yanyan Kong; Shanping Mao; Lingyu Xu; Wu Zhang (BIBM, 2017)

A New Hybrid Method for Parameter Optimization of SVR. - Jiang Xie 003; Taifeng Sun; Jieyu Zhang; Wu Zhang (J. Adv. Comput. Intell. Intell. Informatics, 2018)

Kernel differential subgraph reveals dynamic changes in biomolecular networks. - Jiang Xie 003; Dongfang Lu; Jiaxin Li; Jiao Wang; Yong Zhang; Yanhui Li; Qing Nie (J. Bioinform. Comput. Biol., 2018)

Large-Scale Lattice Boltzmann Method Simulations of Stenosed Carotid Bifurcation. - Sen Ge; Jiang Xie 003; Haiya Wang; Cong Zhu; Wu Zhang (HPCC/SmartCity/DSS, 2019)

A Novel Differential Essential Genes Prediction Method Based on Random Forests Model. - Jiang Xie 003; Jiamin Sun; Jiaxin Li; Fuzhang Yang; Haozhe Li; Jiao Wang (ICIC (2), 2019)

A Novel Weight Learning Approach Based on Density for Accurate Prediction of Atherosclerosis. - Jiang Xie 003; Ruiying Wu; Haitao Wang; Yanyan Kong; Haozhe Li; Wu Zhang (ICIC (2), 2019)

NDDR-LCS: A Multi-Task Learning Method for Classification of Carotid Plaques. - Huayu Shen; Wu Zhang; Haiya Wang; Guangtai Ding; Jiang Xie 003 (ICIP, 2020)

DNF: A differential network flow method to identify rewiring drivers for gene regulatory networks. - Jiang Xie 003; Fuzhang Yang; Jiao Wang; Mathew Karikomi; Yiting Yin; Jiamin Sun; Tieqiao Wen; Qing Nie (Neurocomputing, 2020)

An Adaptive Scale Sea Surface Temperature Predicting Method Based on Deep Learning With Attention Mechanism. - Jiang Xie 003; Jiyuan Zhang; Jie Yu 009; Lingyu Xu (IEEE Geosci. Remote. Sens. Lett., 2020)

A Deep Learning Approach Based on Feature Reconstruction and Multi-dimensional Attention Mechanism for Drug-Drug Interaction Prediction. - Jiang Xie 003; Jiaming Ouyang; Chang Zhao; Hongjian He; Xin Dong (ISBRA, 2021)

Prediction of cardiovascular diseases using weight learning based on density information. - Jiang Xie 003; Ruiying Wu; Haitao Wang; Haibing Chen; Xiaochun Xu; Yanyan Kong; Wu Zhang (Neurocomputing, 2021)

Prediction of Essential Genes in Comparison States Using Machine Learning. - Jiang Xie 003; Chang Zhao; Jiamin Sun; Jiaxin Li; Fuzhang Yang; Jiao Wang; Qing Nie (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

STE-COVIDNet: A Multi-channel Model with Attention Mechanism for Time Series Prediction of COVID-19 Infection. - Hongjian He; Xinwei Lu; Dingkai Huang; Jiang Xie 003 (ICIC (2), 2022)

KDPCnet: A Keypoint-Based CNN for the Classification of Carotid Plaque. - Bindong Liu; Wu Zhang; Jiang Xie 003 (ICIC (2), 2022)

An Evolving Sea Surface Temperature Predicting Method Based on Multidimensional Spatiotemporal Influences. - Jiang Xie 003; Jiaming Ouyang; Jiyuan Zhang; Baogang Jin; Suixiang Shi; Lingyu Xu (IEEE Geosci. Remote. Sens. Lett., 2022)

Small molecule drug and biotech drug interaction prediction based on multi-modal representation learning. - Dingkai Huang; Hongjian He; Jiaming Ouyang; Chang Zhao; Xin Dong; Jiang Xie 003 (BMC Bioinform., 2022)

CPTV: Classification by tracking of carotid plaque in ultrasound videos. - Jiang Xie 003; Ying Li; Xiaochun Xu; Jinzhu Wei; Haozhe Li; Shuo Wu; Haibing Chen (Comput. Medical Imaging Graph., 2023)

MSFF-MA-DDI: Multi-Source Feature Fusion with Multiple Attention blocks for predicting Drug-Drug Interaction events. - Qi Jin; Jiang Xie 003; Dingkai Huang; Chang Zhao; Hongjian He (Comput. Biol. Chem., 2024)

PocketDTA: A pocket-based multimodal deep learning model for drug-target affinity prediction. - Jiang Xie 003; Shengsheng Zhong; Dingkai Huang; Wei Shao (Comput. Biol. Chem., 2025)

Knowledge-enhanced Parameter-efficient Transfer Learning with METER for medical vision-language tasks. - Xudong Liang; Jiang Xie 003; Jinzhu Wei; Mengfei Zhang; Haoyang Zhang 001 (J. Biomed. Informatics, 2025)

A deep learning approach for early prediction of breast cancer neoadjuvant chemotherapy response on multistage bimodal ultrasound images. - Jiang Xie 003; Jinzhu Wei; Huachan Shi; Zhe Lin; Jinsong Lu; Xueqing Zhang; Caifeng Wan (BMC Medical Imaging, 2025)