A Progressive Cut Refinement Scheme for Revision Total Hip Replacement Surgery Using C-arm Fluoroscopy. - Jianhua Yao 001; Russell H. Taylor; Randal P. Goldberg; Rajesh Kumar 001; Andrew Bzostek; Robert Van Vorhis; Peter Kazanzides; André Guéziec; Janez Funda (MICCAI, 1999)

Computer-integrated revision total hip replacement surgery: concept and preliminary results. - Russell H. Taylor; Leo Joskowicz; Bill Williamson; André Guéziec; Alan D. Kalvin; Peter Kazanzides; Robert Van Vorhis; Jianhua Yao 001; Rajesh Kumar 001; Andrew Bzostek; Alind Sahay; Martin Börner; et al. (Medical Image Anal., 1999)

Tetrahedral Mesh Modeling of Density Data for Anatomical Atlases and Intensity-Based Registration. - Jianhua Yao 001; Russell H. Taylor (MICCAI, 2000)

Construction and simplification of bone density models. - Jianhua Yao 001; Russell H. Taylor (Image Processing, 2001)

Assessing Accuracy Factors in Deformable 2D/3D Medical Image Registration Using a Statistical Pelvis Model. - Jianhua Yao 001; Russell H. Taylor (ICCV, 2003)

A multiple-layer flexible mesh template matching method for non-rigid registration between a pelvis model and CT images. - Jianhua Yao 001; Russell H. Taylor (Image Processing, 2003)

Non-Rigid Registration And Correspondence Finding In Medical Image Analysis Using Multiple-Layer Flexible Mesh Template Matching. - Jianhua Yao 001; Russell H. Taylor (Int. J. Pattern Recognit. Artif. Intell., 2003)

Computer Aided Monitoring of Fibrous Dysplasia Disease in Craniofacial Bones. - Jianhua Yao 001; Michael Collins; John A. Butman; Janice Lee (ISBI, 2004)

Colonic polyp segmentation in CT colonography-based on fuzzy clustering and deformable models. - Jianhua Yao 001; Meghan Miller; Marek Franaszek; Ronald M. Summers (IEEE Trans. Medical Imaging, 2004)

An Efficient Feature Selection Algorithm for Computer-Aided Polyp Detection. - Jiang Li 001; Jianhua Yao 001; Ronald M. Summers; Amy K. Hara (FLAIRS, 2005)

Classification and calculation of breast fibroglandular tissue volume on SPGR fat suppressed MRI. - Jianhua Yao 001; Jo Anne Zujewski; Jennifer Orzano; Sheila A. Prindiville; Catherine Chow (Image Processing, 2005)

Wavelet method for CT colonography computer-aided polyp detection. - Jiang Li 001; Marek Franaszek; Nicholas Petrick; Jianhua Yao 001; Adam Huang; Ronald M. Summers (ISBI, 2006)

Computer aided evaluation of ankylosing spondylitis. - Sovira Tan; Jianhua Yao 001; Michael M. Ward; Lawrence Yao; Ronald M. Summers (ISBI, 2006)

Automated spinal column extraction and partitioning. - Jianhua Yao 001; Stacy D. O'Connor; Ronald M. Summers (ISBI, 2006)

Automatic colonic polyp detection using multi-objective evolutionary techniques. - Jiang Li 001; Adam Huang; Jianhua Yao 001; Ingmar Bitter; Nicholas Petrick; Ronald M. Summers; Perry J. Pickhardt; J. Richard Choi (Image Processing, 2006)

Hybrid committee classifier for a computerized colonic polyp detection system. - Jiang Li 001; Jianhua Yao 001; Nicholas Petrick; Ronald M. Summers; Amy K. Hara (Image Processing, 2006)

Level set based vertebra segmentation for the evaluation of Ankylosing Spondylitis. - Sovira Tan; Jianhua Yao 001; Michael M. Ward; Lawrence Yao; Ronald M. Summers (Image Processing, 2006)

Computer aided lytic bone metastasis detection using regular CT images. - Jianhua Yao 001; Stacy D. O'Connor; Ronald M. Summers (Image Processing, 2006)

DCE-MRI Segmentation and Motion Correction Based on Active Contour Model and Forward Mapping. - Wenzhu Lu; Jianhua Yao 001; Chao Lu; Sheila A. Prindiville; Catherine Chow (SNPD, 2006)

An Efficient Feature Selection Algorithm for Computer-aided Polyp Detection. - Jiang Li 001; Jianhua Yao 001; Ronald M. Summers; Nicholas Petrick; Michael T. Manry; Amy K. Hara (Int. J. Artif. Intell. Tools, 2006)

CT Colonography Computer-Aided Polyp Detection using Topographical Height Map. - Jianhua Yao 001; Jiang Li 001; Ronald M. Summers (ICIP (5), 2007)

3D Multi-Scale Level Set Segmentation of Vertebrae. - Sovira Tan; Jianhua Yao 001; Michael M. Ward; Lawrence Yao; Ronald M. Summers (ISBI, 2007)

Computer Aided Detection of Lytic Bone Metastases in the Spine Using Routine CT Images. - Jianhua Yao 001; Stacy D. O'Connor; Ronald M. Summers (ISBI, 2007)

Detection and Segmentation of Colonic Polyps on Haustral Folds. - Jianhua Yao 001; Ronald M. Summers (ISBI, 2007)

Texture-based computer-aided diagnosis system for lung fibrosis. - Jesus J. Caban; Jianhua Yao 001; Nilo A. Avila; Joseph R. Fontana; Vincent C. Manganiello (Computer-Aided Diagnosis, 2007)

Validating Pareto optimal operation parameters of polyp detection algorithms for CT colonography. - Jiang Li 001; Adam Huang; Nicholas Petrick; Jianhua Yao 001; Ronald M. Summers (Computer-Aided Diagnosis, 2007)

Collaborative classifiers in CT colonography CAD. - Jianhua Yao 001; Jiang Li 001; Ronald M. Summers (Computer-Aided Diagnosis, 2007)

Improved livewire method for segmentation on low contrast and noisy images. - David Chen; Jianhua Yao 001 (Image Processing, 2007)

Level sets on non-planar manifolds for ridge detection on isosurfaces. - Sovira Tan; Jianhua Yao 001; Michael M. Ward; Lawrence Yao; Ronald M. Summers (Image Processing, 2007)

Detection of anatomical landmarks in human colon from computed tomographic colonography images. - Ananda S. Chowdhury; Jianhua Yao 001; Robert L. Van Uitert Jr.; Marius George Linguraru; Ronald M. Summers (ICPR, 2008)

Matching colonic polyps from prone and supine CT colonography scans based on statistical curvature information. - Shijun Wang; Jianhua Yao 001; Ronald M. Summers (ICPR, 2008)

Computer-aided grading of lymphangioleiomyomatosis (LAM) using HRCT. - Jianhua Yao 001; Nilo Avila; Andrew Dwyer; Angelo M. Taveira-DaSilva; Olanda M. Hathaway; Joel Moss (ICPR, 2008)

DMLLE: a large-scale dimensionality reduction method for detection of polyps in CT colonography. - Shijun Wang; Jianhua Yao 001; Ronald M. Summers (Computer-Aided Diagnosis, 2008)

Automatic Determination of Arterial Input Function for Dynamic Contrast Enhanced MRI in Tumor Assessment. - Jeremy Chen; Jianhua Yao 001; David Thomasson (MICCAI (1), 2008)

Acetabular rim and surface segmentation for hip surgery planning and dysplasia evaluation. - Sovira Tan; Jianhua Yao 001; Lawrence Yao; Ronald M. Summers; Michael M. Ward (Image-Guided Procedures, 2008)

Vertebral surface registration using ridgelines/crestlines. - Sovira Tan; Jianhua Yao 001; Lawrence Yao; Ronald M. Summers; Michael M. Ward (Image Processing, 2008)

Computer Aided Evaluation of Ankylosing Spondylitis Using High-Resolution CT. - Sovira Tan; Jianhua Yao 001; Michael M. Ward; Lawrence Yao; Ronald M. Summers (IEEE Trans. Medical Imaging, 2008)

Reducing the False Positive Rate of Computer Aided Detection for CT Colonography Using Content Based Image Retrieval. - Javed M. Aman; Jianhua Yao 001; Ronald M. Summers (ISBI, 2009)

Renal Tumor Quantification and Classification in Triple-Phase Contrast-Enhanced Abdominal CT. - Marius George Linguraru; Rabindra Gautam; James Peterson; Jianhua Yao 001; W. Marston Linehan; Ronald M. Summers (ISBI, 2009)

Centerline Registration of Prone and Supine CT Colonography Scans Based on Correlation Optimized Warping and Anatomical Landmarks. - Shijun Wang; Jianhua Yao 001; Jiamin Liu; Nicholas Petrick; Ronald M. Summers (ISBI, 2009)

Computer Aided Evaluation of Pleural Effusion Using Chest CT Images. - Jianhua Yao 001; Wei Han; Ronald M. Summers (ISBI, 2009)

Two methods of Haustral fold detection from computed tomographic virtual colonoscopy images. - Ananda S. Chowdhury; Sovira Tan; Jianhua Yao 001; Marius George Linguraru; Ronald M. Summers (Computer-Aided Diagnosis, 2009)

Combining heterogeneous features for colonic polyp detection in CTC based on semi-definite programming. - Shijun Wang; Jianhua Yao 001; Nicholas A. Petrick; Ronald M. Summers (Computer-Aided Diagnosis, 2009)

Statistical Location Model for Abdominal Organ Localization. - Jianhua Yao 001; Ronald M. Summers (MICCAI (1), 2009)

Employing anatomical knowledge in vertebral column labeling. - Jianhua Yao 001; Ronald M. Summers (Image Processing, 2009)

Introduction to the Issue on Digital Image Processing Techniques for Oncology. - Jinshan Tang; Rangaraj M. Rangayyan; Jianhua Yao 001; Yongyi Yang (IEEE J. Sel. Top. Signal Process., 2009)

Breast Tumor Analysis in Dynamic Contrast Enhanced MRI Using Texture Features and Wavelet Transform. - Jianhua Yao 001; Jeremy Chen; Catherine Chow (IEEE J. Sel. Top. Signal Process., 2009)

Renal tumor quantification and classification in contrast-enhanced abdominal CT. - Marius George Linguraru; Jianhua Yao 001; Rabindra Gautam; James Peterson; Zhixi Li; W. Marston Linehan; Ronald M. Summers (Pattern Recognit., 2009)

Digital image processing and pattern recognition techniques for the detection of cancer. - Jinshan Tang; Rangaraj M. Rangayyan; Jianhua Yao 001; Yongyi Yang (Pattern Recognit., 2009)

Employing topographical height map in colonic polyp measurement and false positive reduction. - Jianhua Yao 001; Jiang Li 001; Ronald M. Summers (Pattern Recognit., 2009)

Improved method for predicting polyp location from CT colonography for optical colonoscopy. - Kevin W. Chang; Jiamin Liu; Jianhua Yao 001; Ronald M. Summers (ICIP, 2010)

3D automatic anatomy segmentation based on graph cut-oriented active appearance models. - Xinjian Chen 001; Jianhua Yao 001; Ying Zhuge; Ulas Bagci (ICIP, 2010)

Tracking kidney tumor dimensional measurements via image morphing. - Nathaniel Strawn; Jianhua Yao 001 (ICIP, 2010)

Content-based image retrieval on CT colonography using rotation and scale invariant features and bag-of-words model. - Javed M. Aman; Jianhua Yao 001; Ronald M. Summers (ISBI, 2010)

Template method to improve brain segmentation from inhomogeneous brain magnetic resonance images at high fields. - Marcelo Adrián Castro; Jianhua Yao 001; Yuxi Pang; Eva Baker; John A. Butman; David Thomasson (ISBI, 2010)

Automated measurement and segmentation of abdominal adipose tissue in MRI. - Daniel Lewis Sussman; Jianhua Yao 001; Ronald M. Summers (ISBI, 2010)

FEM Based 3D Tumor Growth Prediction for Kidney Tumor. - Xinjian Chen 001; Ronald M. Summers; Jianhua Yao 001 (MIAR, 2010)

Organ Pose Distribution Model and an MAP Framework for Automated Abdominal Multi-organ Localization. - Xiaofeng Liu; Marius George Linguraru; Jianhua Yao 001; Ronald M. Summers (MIAR, 2010)

Prediction of polyp histology on CT colonography using content-based image retrieval. - Javed M. Aman; Jianhua Yao 001; Ronald M. Summers (Computer-Aided Diagnosis, 2010)

Matching colonic polyps using correlation optimized warping. - Shijun Wang; Jianhua Yao 001; Nicholas Petrick; Ronald M. Summers (Computer-Aided Diagnosis, 2010)

Characterizing Colonic Detections in CT Colonography Using Curvature-Based Feature Descriptor and Bag-of-Words Model. - Javed M. Aman; Ronald M. Summers; Jianhua Yao 001 (Virtual Colonoscopy and Abdominal Imaging, 2010)

Teniae Coli Extraction in Human Colon for Computed Tomographic Colonography Images. - Zhuoshi Wei; Jianhua Yao 001; Shijun Wang; Ronald M. Summers (Virtual Colonoscopy and Abdominal Imaging, 2010)

Realistic colon simulation in CT colonography using mesh skinning. - Jianhua Yao 001; Ananda S. Chowdhury; Ronald M. Summers (Image-Guided Procedures, 2010)

Automated fat measurement and segmentation with intensity inhomogeneity correction. - Daniel Lewis Sussman; Jianhua Yao 001; Ronald M. Summers (Image Processing, 2010)

Combining Statistical and Geometric Features for Colonic Polyp Detection in Ctc Based on Multiple Kernel Learning. - Shijun Wang; Jianhua Yao 001; Nicholas Petrick; Ronald M. Summers (Int. J. Comput. Intell. Appl., 2010)

Colonic fold detection from computed tomographic colonography images using diffusion-FCM and level sets. - Ananda S. Chowdhury; Sovira Tan; Jianhua Yao 001; Ronald M. Summers (Pattern Recognit. Lett., 2010)

Reversible Projection Technique for Colon Unfolding. - Jianhua Yao 001; Ananda S. Chowdhury; Javed M. Aman; Ronald M. Summers (IEEE Trans. Biomed. Eng., 2010)

Template-Based B 1 Inhomogeneity Correction in 3T MRI Brain Studies. - Marcelo Adrián Castro; Jianhua Yao 001; Yuxi Pang; Christabel Lee; Eva Baker; John A. Butman; Iordanis E. Evangelou; David Thomasson (IEEE Trans. Medical Imaging, 2010)

Automatic detection of tree-in-bud patterns for computer assisted diagnosis of respiratory tract infections. - Ulas Bagci; Jianhua Yao 001; Jesus Caban; Tara N. Palmore; Anthony F. Suffredini; Daniel J. Mollura (EMBC, 2011)

A graph-theoretic approach for segmentation of PET images. - Ulas Bagci; Jianhua Yao 001; Jesus Caban; Evrim Turkbey; Omer Aras; Daniel J. Mollura (EMBC, 2011)

Monitoring pulmonary fibrosis by fusing clinical, physiological, and computed tomography features. - Jesus J. Caban; Jianhua Yao 001; Ulas Bagci; Daniel J. Mollura (EMBC, 2011)

Detection of pelvic fractures using graph cuts and curvatures. - Ananda S. Chowdhury; Joseph E. Burns; Bhaskar Sen; Arka Mukherjee; Jianhua Yao 001; Ronald M. Summers (ICIP, 2011)

Improved 3D automatic segmentation and measurement of pleural effusions. - John Bliton; Jianhua Yao 001; Mark Bi; Ronald M. Summers (ISBI, 2011)

Abdominal multi-organ localization on contrast-enhanced CT based on maximum a posteriori probability and minimum volume overlap. - Xiaofeng Liu; Marius George Linguraru; Jianhua Yao 001; Ronald M. Summers (ISBI, 2011)

Computer-aided detection of sclerotic bone metastases in the spine using watershed algorithm and support vector machines. - Tatjana Wiese; Joseph E. Burns; Jianhua Yao 001; Ronald M. Summers (ISBI, 2011)

Automatic colonic polyp shape determination using content-based image retrieval. - Javed M. Aman; Jianhua Yao 001; Ronald M. Summers (Computer-Aided Diagnosis, 2011)

Enhancing image classification models with multi-modal biomarkers. - Jesus J. Caban; David Liao; Jianhua Yao 001; Daniel J. Mollura; Bernadette Gochuico; Terry S. Yoo (Computer-Aided Diagnosis, 2011)

Computer-aided abdominal lymph node detection using contrast-enhanced CT images. - Jiamin Liu; Jeremy Hua; Jianhua Yao 001; Jacob M. White 001; Ronald M. Summers (Computer-Aided Diagnosis, 2011)

Computer-aided teniae coli detection using height maps from computed tomographic colonography images. - Zhuoshi Wei; Jianhua Yao 001; Shijun Wang; Ronald M. Summers (Computer-Aided Diagnosis, 2011)

Computer-aided assessment of pulmonary disease in novel swine-origin H1N1 influenza on CT. - Jianhua Yao 001; Andrew J. Dwyer; Ronald M. Summers; Daniel J. Mollura (Computer-Aided Diagnosis, 2011)

Learning Shape and Texture Characteristics of CT Tree-in-Bud Opacities for CAD Systems. - Ulas Bagci; Jianhua Yao 001; Jesus Caban; Anthony F. Suffredini; Tara N. Palmore; Daniel J. Mollura (MICCAI (3), 2011)

Renal Cortex Segmentation Using Optimal Surface Search with Novel Graph Construction. - Xiuli Li; Xinjian Chen 001; Jianhua Yao 001; Xing Zhang; Jie Tian 001 (MICCAI (3), 2011)

Automatic 3D kidney segmentation based on shape constrained GC-OAAM. - Xinjian Chen 001; Ronald M. Summers; Jianhua Yao 001 (Image Processing, 2011)

Nonlinear band expansion and nonnegative matrix underapproximation for unsupervised segmentation of a liver from a multi-phase CT image. - Ivica Kopriva; Xinjian Chen 001; Jianhua Yao 001 (Image Processing, 2011)

FEM-Based 3-D Tumor Growth Prediction for Kidney Tumor. - Xinjian Chen 001; Ronald M. Summers; Jianhua Yao 001 (IEEE Trans. Biomed. Eng., 2011)

A cross-platform and distributive database system for cumulative tumor measurement. - Jiaxin Huang 002; David A. Bluemke; Xiao Zhang; Ronald M. Summers; Les R. Folio; Jianhua Yao 001 (EMBC, 2012)

Point-guided modeling and segmentation of myocardium for low dose cardiac CT images. - Yixun Liu; Marcelo Souto Nacif; Songtao Liu; Christopher T. Sibley; David A. Bluemke; Ronald M. Summers; Jianhua Yao 001 (EMBC, 2012)

High precision semi-automated vertebral height measurement using computed tomography: A phantom study. - Sovira Tan; Jianhua Yao 001; Lawrence Yao; Michael M. Ward (EMBC, 2012)

Integration of a Multigrid ODE solver into an open medical simulation framework. - Xunlei Wu; Jianhua Yao 001; Andinet Enquobahrie; Huai-Ping Lee; Michel A. Audette (EMBC, 2012)

Automatic quantification of Tree-in-Bud patterns from CT scans. - Ulas Bagci; Kirsten Miller-Jaster; Jianhua Yao 001; Albert Wu; Jesus Caban; Kenneth N. Olivier; Omer Aras; Daniel J. Mollura (ISBI, 2012)

Automated detection of pelvic fractures from volumetric CT images. - Ananda S. Chowdhury; Joseph E. Burns; Arka Mukherjee; Bhaskar Sen; Jianhua Yao 001; Ronald M. Summers (ISBI, 2012)

Automatic detection and segmentation of abdominopelvic lymph nodes on computed tomography scans. - Jiamin Liu; Chin-Hsiang Feng; Jeremy Hua; Jianhua Yao 001; Jacob M. White 001; Ronald M. Summers (ISBI, 2012)

ROC-like optimization by sample ranking: Application to CT colonography. - Shijun Wang; Matthew McKenna; Nicholas Petrick; Berkman Sahiner; Marius George Linguraru; Zhuoshi Wei; Jianhua Yao 001; Ronald M. Summers (ISBI, 2012)

Supine and prone CT colonography registration by matching graphs of teniae coli. - Zhuoshi Wei; Shijun Wang; Nicholas Petrick; Jianhua Yao 001; Senthil Periaswamy; Ronald M. Summers (ISBI, 2012)

Sclerotic rib metastases detection on routine CT images. - Jianhua Yao 001; Joseph E. Burns; Ronald M. Summers (ISBI, 2012)

Mesenteric vasculature-guided small bowel segmentation on high-resolution 3D CT angiography scans. - Weidong Zhang 001; Jiamin Liu; Jianhua Yao 001; Tan B. Nguyen; Adeline Louie; Stephen Wank; Wieslaw L. Nowinski; Ronald M. Summers (ISBI, 2012)

Computer-aided mesenteric small vessel segmentation on high-resolution 3D contrast-enhanced CT angiography scans. - Weidong Zhang 001; Jiamin Liu; Jianhua Yao 001; Tan Nguyen; Adeline Louie; Stephen Wank; Ronald M. Summers (Computer-Aided Diagnosis, 2012)

Computer-aided marginal artery detection on computed tomographic colonography. - Zhuoshi Wei; Jianhua Yao 001; Shijun Wang; Jiamin Liu; Ronald M. Summers (Computer-Aided Diagnosis, 2012)

Detection of sclerotic bone metastases in the spine using watershed algorithm and graph cut. - Tatjana Wiese; Jianhua Yao 001; Joseph E. Burns; Ronald M. Summers (Computer-Aided Diagnosis, 2012)

Quantitative vertebral compression fracture evaluation using a height compass. - Jianhua Yao 001; Joseph E. Burns; Tatjana Wiese; Ronald M. Summers (Computer-Aided Diagnosis, 2012)

Co-segmentation of Functional and Anatomical Images. - Ulas Bagci; Jayaram K. Udupa; Jianhua Yao 001; Daniel J. Mollura (MICCAI (3), 2012)

A Fully Automated Framework for Renal Cortex Segmentation. - Xinjian Chen 001; Hemin Zhao; Jianhua Yao 001 (Abdominal Imaging, 2012)

Detection of Vertebral Body Fractures Based on Cortical Shell Unwrapping. - Jianhua Yao 001; Joseph E. Burns; Hector Munoz; Ronald M. Summers (MICCAI (3), 2012)

A framework of whole heart extracellular volume fraction estimation for low dose cardiac CT images. - Xinjian Chen 001; Ronald M. Summers; Marcelo S. Nacif; Songtao Liu; David A. Bluemke; Jianhua Yao 001 (Image Processing, 2012)

Incorporation of physical constraints in optimal surface search for renal cortex segmentation. - Xiuli Li; Xinjian Chen 001; Jianhua Yao 001; Xing Zhang; Jie Tian 001 (Image Processing, 2012)

Computer-assisted detection of infectious lung diseases: A review. - Ulas Bagci; Mike Bray; Jesus Caban; Jianhua Yao 001; Daniel J. Mollura (Comput. Medical Imaging Graph., 2012)

Corrigendum to "Computer-assisted detection of infectious lung diseases: A review" [Comput. Med. Imag. Graph. 36(2012) 72-84]. - Ulas Bagci; Mike Bray; Jesus Caban; Jianhua Yao 001; Daniel J. Mollura (Comput. Medical Imaging Graph., 2012)

Enhancing Image Analytic Tools by Fusing Quantitative Physiological Values with Image Features. - Jesus Caban; Jianhua Yao 001; Daniel J. Mollura (J. Digit. Imaging, 2012)

Automatic Detection and Quantification of Tree-in-Bud (TIB) Opacities From CT Scans. - Ulas Bagci; Jianhua Yao 001; Albert Wu; Jesus Caban; Tara N. Palmore; Anthony F. Suffredini; Omer Aras; Daniel J. Mollura (IEEE Trans. Biomed. Eng., 2012)

Predicting Polyp Location on Optical Colonoscopy From CT Colonography by Minimal-Energy Curve Modeling of the Colonoscope Path. - Jiamin Liu; Kevin W. Chang; Jianhua Yao 001; Ronald M. Summers (IEEE Trans. Biomed. Eng., 2012)

Medical Image Segmentation by Combining Graph Cuts and Oriented Active Appearance Models. - Xinjian Chen 001; Jayaram K. Udupa; Ulas Bagci; Ying Zhuge; Jianhua Yao 001 (IEEE Trans. Image Process., 2012)

A Framework of Whole Heart Extracellular Volume Fraction Estimation for Low-Dose Cardiac CT Images. - Xinjian Chen 001; Marcelo S. Nacif; Songtao Liu; Christopher T. Sibley; Ronald M. Summers; David A. Bluemke; Jianhua Yao 001 (IEEE Trans. Inf. Technol. Biomed., 2012)

Automatic Renal Cortex Segmentation Using Implicit Shape Registration and Novel Multiple Surfaces Graph Search. - Xiuli Li; Xinjian Chen 001; Jianhua Yao 001; Xing Zhang; Fei Yang; Jian Tian (IEEE Trans. Medical Imaging, 2012)

Erratum to "Automatic Renal Cortex Segmentation Using Implicit Shape Registration and Novel Multiple Surfaces Graph Search". - Xiuli Li; Xinjian Chen 001; Jianhua Yao 001; Xing Zhang; Fei Yang; Jie Tian 001 (IEEE Trans. Medical Imaging, 2012)

Tumor growth modeling based on dual phase CT and FDG-PET. - Yixun Liu; Samira M. Sadowski; Allison B. Weisbrod; Electron Kebebew; Ronald M. Summers; Jianhua Yao 001 (ISBI, 2013)

Augmenting tumor sensitive matching flow to improve detection and segmentation of ovarian cancer metastases within a PDE framework. - Jianfei Liu; Shijun Wang; Marius George Linguraru; Jianhua Yao 001; Ronald M. Summers (ISBI, 2013)

Computer-aided detection of colitis on computed tomography using a visual codebook. - Zhuoshi Wei; Weidong Zhang 001; Jianfei Liu; Shijun Wang; Jianhua Yao 001; Ronald M. Summers (ISBI, 2013)

Automatic anatomical labeling of abdominal arteries for small bowel evaluation on 3D CT scans. - Weidong Zhang 001; Jiamin Liu; Jianhua Yao 001; Ronald M. Summers (ISBI, 2013)

Segmenting the thoracic, abdominal and pelvic musculature on CT scans combining atlas-based model and active contour model. - Weidong Zhang 001; Jiamin Liu; Jianhua Yao 001; Ronald M. Summers (Computer-Aided Diagnosis, 2013)

Detection of vertebral degenerative disc disease based on cortical shell unwrapping. - Hector E. Muñoz; Jianhua Yao 001; Joseph E. Burns; Ronald M. Summers (Computer-Aided Diagnosis, 2013)

Computer assisted measurement of femoral cortex thickening on radiographs. - Jianhua Yao 001; Yixun Liu; Foster Chen; Ronald M. Summers; Timothy Bhattacharyya (Computer-Aided Diagnosis, 2013)

Multimodal Image Driven Patient Specific Tumor Growth Modeling. - Yixun Liu; Samira M. Sadowski; Allison B. Weisbrod; Electron Kebebew; Ronald M. Summers; Jianhua Yao 001 (MICCAI (3), 2013)

A Variational Framework for Joint Detection and Segmentation of Ovarian Cancer Metastases. - Jianfei Liu; Shijun Wang; Marius George Linguraru; Jianhua Yao 001; Ronald M. Summers (MICCAI (2), 2013)

Manifold Diffusion for Exophytic Kidney Lesion Detection on Non-contrast CT Images. - Jianfei Liu; Shijun Wang; Jianhua Yao 001; Marius George Linguraru; Ronald M. Summers (MICCAI (1), 2013)

Build 4-dimensional myocardial model for dynamic CT images. - Yixun Liu; Songtao Liu; Albert C. Lardo; Karl H. Schuleri; Marcelo S. Nacif; David A. Bluemke; Ronald M. Summers; Jianhua Yao 001 (Image Processing, 2013)

Synergistic combination of clinical and imaging features predicts abnormal imaging patterns of pulmonary infections. - Ulas Bagci; Kirsten Miller-Jaster; Kenneth N. Olivier; Jianhua Yao 001; Daniel J. Mollura (Comput. Biol. Medicine, 2013)

Joint segmentation of anatomical and functional images: Applications in quantification of lesions from PET, PET-CT, MRI-PET, and MRI-PET-CT images. - Ulas Bagci; Jayaram K. Udupa; Neil Mendhiratta; Brent Foster; Ziyue Xu 001; Jianhua Yao 001; Xinjian Chen 001; Daniel J. Mollura (Medical Image Anal., 2013)

Kidney Tumor Growth Prediction by Coupling Reaction-Diffusion and Biomechanical Model. - Xinjian Chen 001; Ronald M. Summers; Jianhua Yao 001 (IEEE Trans. Biomed. Eng., 2013)

Automatic Segmentation and Measurement of Pleural Effusions on CT. - Jianhua Yao 001; John Bliton; Ronald M. Summers (IEEE Trans. Biomed. Eng., 2013)

Mesenteric Vasculature-Guided Small Bowel Segmentation on 3-D CT. - Weidong Zhang 001; Jiamin Liu; Jianhua Yao 001; Adeline Louie; Tan B. Nguyen; Stephen Wank; Wieslaw L. Nowinski; Ronald M. Summers (IEEE Trans. Medical Imaging, 2013)

Detection and station mapping of mediastinal lymph nodes on thoracic computed tomography using spatial prior from multi-atlas label fusion. - Jiamin Liu; Jocelyn Zhao; Joanne Hoffman; Jianhua Yao 001; Le Lu 001; Evrim Turkbey; Christine Kim; Ronald M. Summers (ISBI, 2014)

Automated extraction of anatomic landmarks on vertebrae based on anatomic knowledge and geometrical constraints. - Jianhua Yao 001; Joseph E. Burns; Sasha Getty; James Stieger; Ronald M. Summers (ISBI, 2014)

Mediastinal lymph node detection on thoracic CT scans using spatial prior from multi-atlas label fusion. - Jiamin Liu; Jocelyn Zhao; Joanne Hoffman; Jianhua Yao 001; Weidong Zhang 001; Evrim B. Turkbey; Shijun Wang; Christine Kim; Ronald M. Summers (Computer-Aided Diagnosis, 2014)

Multilevel image recognition using discriminative patches and kernel covariance descriptor. - Le Lu 001; Jianhua Yao 001; Evrim Turkbey; Ronald M. Summers (Computer-Aided Diagnosis, 2014)

Vertebral degenerative disc disease severity evaluation using random forest classification. - Hector E. Munoz; Jianhua Yao 001; Joseph E. Burns; Yasuyuki Pham; James Stieger; Ronald M. Summers (Computer-Aided Diagnosis, 2014)

Reducing false positives of small bowel segmentation on CT scans by localizing colon regions. - Weidong Zhang 001; Jiamin Liu; Jianhua Yao 001; Ronald M. Summers (Computer-Aided Diagnosis, 2014)

Tumor Growth Prediction with Hyperelastic Biomechanical Model, Physiological Data Fusion, and Nonlinear Optimization. - Ken C. L. Wong; Ronald M. Summers; Electron Kebebew; Jianhua Yao 001 (MICCAI (2), 2014)

Robust automated lymph node segmentation with random forests. - David Allen; Le Lu 001; Jianhua Yao 001; Jiamin Liu; Evrim Turkbey; Ronald M. Summers (Image Processing, 2014)

Locally constrained active contour: a region-based level set for ovarian cancer metastasis segmentation. - Jianfei Liu; Jianhua Yao 001; Shijun Wang; Marius George Linguraru; Ronald M. Summers (Image Processing, 2014)

Computer aided detection of epidural masses on computed tomography scans. - Jiamin Liu; Sanket Pattanaik; Jianhua Yao 001; Evrim Turkbey; Weidong Zhang 001; Xiao Zhang; Ronald M. Summers (Comput. Medical Imaging Graph., 2014)

Cortical shell unwrapping for vertebral body abnormality detection on computed tomography. - Jianhua Yao 001; Joseph E. Burns; Hector Munoz; Ronald M. Summers (Comput. Medical Imaging Graph., 2014)

Augment low-field intra-operative MRI with preoperative MRI using a hybrid non-rigid registration method. - Chengjun Yao; Yixun Liu; Jianhua Yao 001; Dongxiao Zhuang; Jinsong Wu 002; Zhiyong Qin; Ying Mao 002; LiangFu Zhou (Comput. Methods Programs Biomed., 2014)

Detection of Sclerotic Spine Metastases via Random Aggregation of Deep Convolutional Neural Network Classifications. - Holger R. Roth; Jianhua Yao 001; Le Lu 001; James Stieger; Joseph E. Burns; Ronald M. Summers (CoRR, 2014)

Patient specific tumor growth prediction using multimodal images. - Yixun Liu; Samira M. Sadowski; Allison B. Weisbrod; Electron Kebebew; Ronald M. Summers; Jianhua Yao 001 (Medical Image Anal., 2014)

Tumor sensitive matching flow: A variational method to detecting and segmenting perihepatic and perisplenic ovarian cancer metastases on contrast-enhanced abdominal CT. - Jianfei Liu; Shijun Wang; Marius George Linguraru; Jianhua Yao 001; Ronald M. Summers (Medical Image Anal., 2014)

Interleaved text/image Deep Mining on a large-scale radiology database. - Hoo-Chang Shin; Le Lu 001; Lauren Kim; Ari Seff; Jianhua Yao 001; Ronald M. Summers (CVPR, 2015)

Pancreatic Tumor Growth Prediction with Multiplicative Growth and Image-Derived Motion. - Ken C. L. Wong; Ronald M. Summers; Electron Kebebew; Jianhua Yao 001 (IPMI, 2015)

Automated segmentation of the thyroid gland on CT using multi-atlas label fusion and random forest. - Jiamin Liu; Divya Narayanan; Kevin W. Chang; Lauren Kim; Evrim Turkbey; Le Lu 001; Jianhua Yao 001; Ronald M. Summers (ISBI, 2015)

Anatomy-specific classification of medical images using deep convolutional nets. - Holger R. Roth; Christopher T. Lee; Hoo-Chang Shin; Ari Seff; Lauren Kim; Jianhua Yao 001; Le Lu 001; Ronald M. Summers (ISBI, 2015)

Automated segmentation of thyroid gland on CT images with multi-atlas label fusion and random classification forest. - Jiamin Liu; Kevin W. Chang; Lauren Kim; Evrim Turkbey; Le Lu 001; Jianhua Yao 001; Ronald M. Summers (Computer-Aided Diagnosis, 2015)

Dynamic cortex stripping for vertebra evaluation. - James Stieger; Joseph E. Burns; Jianhua Yao 001; Ronald M. Summers (Computer-Aided Diagnosis, 2015)

Myocardial strain estimation from CT: towards computer-aided diagnosis on infarction identification. - Ken C. L. Wong; Michael Tee; Marcus Chen; David A. Bluemke; Ronald M. Summers; Jianhua Yao 001 (Computer-Aided Diagnosis, 2015)

Multi-atlas Segmentation with Joint Label Fusion of Osteoporotic Vertebral Compression Fractures on CT. - Yinong Wang 003; Jianhua Yao 001; Holger R. Roth; Joseph E. Burns; Ronald M. Summers (CSI@MICCAI, 2015)

Computer-Aided Infarction Identification from Cardiac CT Images: A Biomechanical Approach with SVM. - Ken C. L. Wong; Michael Tee; Marcus Chen; David A. Bluemke; Ronald M. Summers; Jianhua Yao 001 (MICCAI (2), 2015)

Computer-aided detection of exophytic renal lesions on non-contrast CT images. - Jianfei Liu; Shijun Wang; Marius George Linguraru; Jianhua Yao 001; Ronald M. Summers (Medical Image Anal., 2015)

Tumor growth prediction with reaction-diffusion and hyperelastic biomechanical model by physiological data fusion. - Ken C. L. Wong; Ronald M. Summers; Electron Kebebew; Jianhua Yao 001 (Medical Image Anal., 2015)

Guest Editorial Special Issue on Spine Imaging, Image-Based Modeling, and Image Guided Intervention. - Shuo Li 001; Jianhua Yao 001; Nassir Navab (IEEE Trans. Medical Imaging, 2015)

Learning to Read Chest X-Rays: Recurrent Neural Cascade Model for Automated Image Annotation. - Hoo-Chang Shin; Kirk Roberts; Le Lu 001; Dina Demner-Fushman; Jianhua Yao 001; Ronald M. Summers (CVPR, 2016)

Identification of muscle and subcutaneous and intermuscular adipose tissue on thigh MRI of muscular dystrophy. - William Kovacs; Chia-Ying Liu; Ronald M. Summers; Jianhua Yao 001 (ISBI, 2016)

Osteoporotic and neoplastic compression fracture classification on longitudinal CT. - Yinong Wang 003; Jianhua Yao 001; Joseph E. Burns; Ronald M. Summers (ISBI, 2016)

Differentiation of fat, muscle, and edema in thigh MRIs using random forest classification. - William Kovacs; Chia-Ying Liu; Ronald M. Summers; Jianhua Yao 001 (Computer-Aided Diagnosis, 2016)

Deep convolutional networks for automated detection of posterior-element fractures on spine CT. - Holger R. Roth; Yinong Wang 003; Jianhua Yao 001; Le Lu 001; Joseph E. Burns; Ronald M. Summers (Computer-Aided Diagnosis, 2016)

Improving vertebra segmentation through joint vertebra-rib atlases. - Yinong Wang 003; Jianhua Yao 001; Holger R. Roth; Joseph E. Burns; Ronald M. Summers (Computer-Aided Diagnosis, 2016)

Detection of Degenerative Osteophytes of the Spine on PET/CT Using Region-Based Convolutional Neural Networks. - Yinong Wang 003; Jianhua Yao 001; Joseph E. Burns; Jiamin Liu; Ronald M. Summers (CSI@MICCAI, 2016)

CT thermometry for cone-beam CT guided ablation. - Zachary DeStefano; Nadine Abi-Jaoudeh; Ming Li 052; Bradford J. Wood; Ronald M. Summers; Jianhua Yao 001 (Image-Guided Procedures, 2016)

Regional infarction identification from cardiac CT images: a computer-aided biomechanical approach. - Ken C. L. Wong; Michael Tee; Marcus Chen; David A. Bluemke; Ronald M. Summers; Jianhua Yao 001 (Int. J. Comput. Assist. Radiol. Surg., 2016)

A multi-center milestone study of clinical vertebral CT segmentation. - Jianhua Yao 001; Joseph E. Burns; Daniel Forsberg; Alexander Seitel; Abtin Rasoulian; Purang Abolmaesumi; Kerstin Hammernik; Martin Urschler; Bulat Ibragimov; Robert Korez; Tomaz Vrtovec; Isaac Castro-Mateos; et al. (Comput. Medical Imaging Graph., 2016)

Unsupervised Category Discovery via Looped Deep Pseudo-Task Optimization Using a Large Scale Radiology Image Database. - Xiaosong Wang 001; Le Lu 001; Hoo-Chang Shin; Lauren Kim; Isabella Nogues; Jianhua Yao 001; Ronald M. Summers (CoRR, 2016)

Retrieval, visualization, and mining of large radiation dosage data. - William Kovacs; Samuel Weisenthal; Les R. Folio; Qiaoyi Li; Ronald M. Summers; Jianhua Yao 001 (Inf. Retr. J., 2016)

Open-Source Radiation Exposure Extraction Engine (RE3) with Patient-Specific Outlier Detection. - Samuel J. Weisenthal; Les R. Folio; William Kovacs; Ari Seff; Vana Derderian; Ronald M. Summers; Jianhua Yao 001 (J. Digit. Imaging, 2016)

Interleaved Text/Image Deep Mining on a Large-Scale Radiology Database for Automated Image Interpretation. - Hoo-Chang Shin; Le Lu 001; Lauren Kim; Ari Seff; Jianhua Yao 001; Ronald M. Summers (J. Mach. Learn. Res., 2016)

Improving Computer-Aided Detection Using Convolutional Neural Networks and Random View Aggregation. - Holger R. Roth; Le Lu 001; Jiamin Liu; Jianhua Yao 001; Ari Seff; Kevin M. Cherry; Lauren Kim; Ronald M. Summers (IEEE Trans. Medical Imaging, 2016)

Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning. - Hoo-Chang Shin; Holger R. Roth; Mingchen Gao; Le Lu 001; Ziyue Xu 001; Isabella Nogues; Jianhua Yao 001; Daniel J. Mollura; Ronald M. Summers (IEEE Trans. Medical Imaging, 2016)

Atherosclerotic vascular calcification detection and segmentation on low dose computed tomography scans using convolutional neural networks. - Karthik Chellamuthu; Jiamin Liu; Jianhua Yao 001; Mohammadhadi Bagheri; Le Lu 001; Veit Sandfort; Ronald M. Summers (ISBI, 2017)

Combining fully convolutional networks and graph-based approach for automated segmentation of cervical cell nuclei. - Ling Zhang 002; Milan Sonka; Le Lu 001; Ronald M. Summers; Jianhua Yao 001 (ISBI, 2017)

Texture analysis of common renal masses in multiple MR sequences for prediction of pathology. - Uyen N. Hoang; Ashkan A. Malayeri; Nathan S. Lay; Ronald M. Summers; Jianhua Yao 001 (Computer-Aided Diagnosis, 2017)

Pelvic artery calcification detection on CT scans using convolutional neural networks. - Jiamin Liu; Le Lu 001; Jianhua Yao 001; Mohammadhadi Bagheri; Ronald M. Summers (Computer-Aided Diagnosis, 2017)

Holistic Segmentation of Intermuscular Adipose Tissues on Thigh MRI. - Jianhua Yao 001; William Kovacs; Nathan Hsieh; Chia-Ying Liu; Ronald M. Summers (MICCAI (1), 2017)

Personalized Pancreatic Tumor Growth Prediction via Group Learning. - Ling Zhang 002; Le Lu 001; Ronald M. Summers; Electron Kebebew; Jianhua Yao 001 (MICCAI (2), 2017)

Unsupervised Joint Mining of Deep Features and Image Labels for Large-Scale Radiology Image Categorization and Scene Recognition. - Xiaosong Wang 001; Le Lu 001; Hoo-Chang Shin; Lauren Kim; Mohammadhadi Bagheri; Isabella Nogues; Jianhua Yao 001; Ronald M. Summers (WACV, 2017)

CorteXpert: A model-based method for automatic renal cortex segmentation. - Dehui Xiang; Ulas Bagci; Chao Jin; Fei Shi; Weifang Zhu; Jianhua Yao 001; Milan Sonka; Xinjian Chen 001 (Medical Image Anal., 2017)

DeepPap: Deep Convolutional Networks for Cervical Cell Classification. - Ling Zhang 002; Le Lu 001; Isabella Nogues; Ronald M. Summers; Shaoxiong Liu; Jianhua Yao 001 (IEEE J. Biomed. Health Informatics, 2017)

Pancreatic Tumor Growth Prediction With Elastic-Growth Decomposition, Image-Derived Motion, and FDM-FEM Coupling. - Ken C. L. Wong; Ronald M. Summers; Electron Kebebew; Jianhua Yao 001 (IEEE Trans. Medical Imaging, 2017)

Efficient False Positive Reduction in Computer-Aided Detection Using Convolutional Neural Networks and Random View Aggregation. - Holger R. Roth; Le Lu 001; Jiamin Liu; Jianhua Yao 001; Ari Seff; Kevin M. Cherry; Lauren Kim; Ronald M. Summers (Deep Learning and Convolutional Neural Networks for Medical Image Computing, 2017)

Interleaved Text/Image Deep Mining on a Large-Scale Radiology Image Database. - Hoo-Chang Shin; Le Lu 001; Lauren Kim; Ari Seff; Jianhua Yao 001; Ronald M. Summers (Deep Learning and Convolutional Neural Networks for Medical Image Computing, 2017)

Three Aspects on Using Convolutional Neural Networks for Computer-Aided Detection in Medical Imaging. - Hoo-Chang Shin; Holger R. Roth; Mingchen Gao; Le Lu 001; Ziyue Xu 001; Isabella Nogues; Jianhua Yao 001; Daniel J. Mollura; Ronald M. Summers (Deep Learning and Convolutional Neural Networks for Medical Image Computing, 2017)

Deep LOGISMOS: Deep learning graph-based 3D segmentation of pancreatic tumors on CT scans. - Zhihui Quo; Ling Zhang 002; Le Lu 001; Mohammadhadi Bagheri; Ronald M. Summers; Milan Sonka; Jianhua Yao 001 (ISBI, 2018)

Tracking diaphragm and chest wall movement on cine-MRI. - Jianhua Yao 001; Robert Zhu; Pomi Yun; Nathan Hsieh; William Kovacs; Andrew E. Arai; Ami Mankodi; Ronald M. Summers; A. Reghan Foley; Carsten G. Bönnemann (ISBI, 2018)

Self-learning to detect and segment cysts in lung CT images without manual annotation. - Ling Zhang 002; Vissagan Gopalakrishnan; Le Lu 001; Ronald M. Summers; Joel Moss; Jianhua Yao 001 (ISBI, 2018)

Deep LOGISMOS: Deep Learning Graph-based 3D Segmentation of Pancreatic Tumors on CT scans. - Zhihui Guo; Ling Zhang 002; Le Lu 001; Mohammadhadi Bagheri; Ronald M. Summers; Milan Sonka; Jianhua Yao 001 (CoRR, 2018)

Convolutional Invasion and Expansion Networks for Tumor Growth Prediction. - Ling Zhang 002; Le Lu 001; Ronald M. Summers; Electron Kebebew; Jianhua Yao 001 (IEEE Trans. Medical Imaging, 2018)

Tumor Growth Prediction Using Convolutional Networks. - Ling Zhang 002; Le Lu 001; Ronald M. Summers; Electron Kebebew; Jianhua Yao 001 (Deep Learning and Convolutional Neural Networks for Medical Imaging and Clinical Informatics, 2019)

Efficient Mitosis Detection in Breast Cancer Histology Images by RCNN. - De Cai; Xianhe Sun; Niyun Zhou; Xiao Han 011; Jianhua Yao 001 (ISBI, 2019)

A Semi-Supervised CNN Learning Method with Pseudo-class Labels for Atherosclerotic Vascular Calcification Detection. - Jiamin Liu; Jianhua Yao 001; Mohammadhadi Bagheri; Veit Sandfort; Ronald M. Summers (ISBI, 2019)

Polyp Tracking in Video Colonoscopy Using Optical Flow With an On-The-Fly Trained CNN. - He Zheng; Hanbo Chen; Junzhou Huang; Xuzhi Li; Xiao Han 011; Jianhua Yao 001 (ISBI, 2019)

A semi-supervised CNN learning method with pseudo-class labels for vascular calcification detection on low dose CT scans. - Jiamin Liu; Jianhua Yao 001; Mohammadhadi Bagheri; Ronald M. Summers (Computer-Aided Diagnosis, 2019)

Rectified Cross-Entropy and Upper Transition Loss for Weakly Supervised Whole Slide Image Classifier. - Hanbo Chen; Xiao Han 011; Xinjuan Fan; Xiaoying Lou; Hailing Liu; Junzhou Huang; Jianhua Yao 001 (MICCAI (1), 2019)

From Whole Slide Imaging to Microscopy: Deep Microscopy Adaptation Network for Histopathology Cancer Image Classification. - Yifan Zhang 004; Hanbo Chen; Ying Wei 001; Peilin Zhao; Jiezhang Cao; Xinjuan Fan; Xiaoying Lou; Hailing Liu; Jinlong Hou; Xiao Han 011; Jianhua Yao 001; Qingyao Wu; et al. (MICCAI (1), 2019)

Enhanced Cycle-Consistent Generative Adversarial Network for Color Normalization of H&E Stained Images. - Niyun Zhou; De Cai; Xiao Han 011; Jianhua Yao 001 (MICCAI (1), 2019)

Fine-Grained Classification of Cervical Cells Using Morphological and Appearance Based Convolutional Neural Networks. - Haoming Lin; Yuyang Hu; Siping Chen; Jianhua Yao 001; Ling Zhang 002 (IEEE Access, 2019)

Spatial-Temporal Convolutional LSTMs for Tumor Growth Prediction by Learning 4D Longitudinal Patient Data. - Ling Zhang 002; Le Lu 001; Robert Zhu; Mohammadhadi Bagheri; Ronald M. Summers; Jianhua Yao 001 (CoRR, 2019)

Automatic Mapping of CT Scan Locations on Computational Human Phantoms for Organ Dose Estimation. - Choonsik Lee; Gleb A. Kuzmin; Jinyong Bae; Jianhua Yao 001; Elizabeth Mosher; Les R. Folio (J. Digit. Imaging, 2019)

Predicting Lymph Node Metastasis Using Histopathological Images Based on Multiple Instance Learning With Deep Graph Convolution. - Yu Zhao 009; Fan Yang 081; Yuqi Fang; Hailing Liu; Niyun Zhou; Jun Zhang 018; Jiarui Sun; Sen Yang 006; Bjoern H. Menze; Xinjuan Fan; Jianhua Yao 001 (CVPR, 2020)

Microsatellite Instability Prediction of Uterine Corpus Endometrial Carcinoma Based on H&E Histology Whole-Slide Imaging. - Tongxin Wang; Weijia Lu; Fan Yang 081; Li Liu 017; Zhongyi Dong; Weimin Tang; Jia Chang; Wenjing Huan; Kun Huang 001; Jianhua Yao 001 (ISBI, 2020)

Supervised Augmentation: Leverage Strong Annotation for Limited Data. - Han Zheng; Hong Shang; Zhongqian Sun; Xinghui Fu; Jianhua Yao 001; Junzhou Huang (ISBI, 2020)

Deep Active Learning for Breast Cancer Segmentation on Immunohistochemistry Images. - Haocheng Shen; Kuan Tian; Pei Dong; Jun Zhang 018; Kezhou Yan; Shannon Che; Jianhua Yao 001; Pifu Luo; Xiao Han 011 (MICCAI (5), 2020)

Weakly-Supervised Nucleus Segmentation Based on Point Annotations: A Coarse-to-Fine Self-Stimulated Learning Strategy. - Kuan Tian; Jun Zhang 018; Haocheng Shen; Kezhou Yan; Pei Dong; Jianhua Yao 001; Shannon Che; Pifu Luo; Xiao Han 011 (MICCAI (5), 2020)

Asynchronous in Parallel Detection and Tracking (AIPDT): Real-Time Robust Polyp Detection. - Zijian Zhang; Hong Shang; Han Zheng; Xiaoning Wang; Jiajun Wang; Zhongqian Sun; Junzhou Huang; Jianhua Yao 001 (MICCAI (3), 2020)

COVID-DA: Deep Domain Adaptation from Typical Pneumonia to COVID-19. - Yifan Zhang 004; Shuaicheng Niu; Zhen Qiu; Ying Wei 001; Peilin Zhao; Jianhua Yao 001; Junzhou Huang; Qingyao Wu; Mingkui Tan (CoRR, 2020)

Microscope Based HER2 Scoring System. - Jun Zhang 018; Kuan Tian; Pei Dong; Haocheng Shen; Kezhou Yan; Jianhua Yao 001; Junzhou Huang; Xiao Han 011 (CoRR, 2020)

Blind deblurring for microscopic pathology images using deep learning networks. - Cheng Jiang 001; Jun Liao; Pei Dong; Zhaoxuan Ma; De Cai; Guoan Zheng; Yueping Liu; Hong Bu; Jianhua Yao 001 (CoRR, 2020)

Unsupervised domain adaptation with adversarial learning for mass detection in mammogram. - Rongbo Shen; Jianhua Yao 001; Kezhou Yan; Kuan Tian; Cheng Jiang 001; Ke Zhou 001 (Neurocomputing, 2020)

New Boundary Constraint Loss to Facilitate Glands Segmentation. - Weijia Lu; Jianhua Yao 001; Xiao Han 011; Haocheng Shen (J. Medical Imaging Health Informatics, 2020)

Spatio-Temporal Convolutional LSTMs for Tumor Growth Prediction by Learning 4D Longitudinal Patient Data. - Ling Zhang 002; Le Lu 001; Xiaosong Wang 001; Robert Zhu; Mohammadhadi Bagheri; Ronald M. Summers; Jianhua Yao 001 (IEEE Trans. Medical Imaging, 2020)

An Interpretable Multi-Level Enhanced Graph Attention Network for Disease Diagnosis with Gene Expression Data. - Xiaohan Xing; Fan Yang 081; Hang Li; Jun Zhang 018; Yu Zhao 009; Mingxuan Gao; Junzhou Huang; Jianhua Yao 001 (BIBM, 2021)

Mining the Associations between V(D)J Gene Segments and COVID-19 Disease Characteristics. - Yu Zhao 009; Yidan Zhang; Zhi-An Huang; Fan Yang 081; Lei Duan; Jianhua Yao 001 (BIBM, 2021)

PiPo-Net: A Semi-automatic and Polygon-based Annotation Method for Pathological Images. - Yuqi Fang; Delong Zhu 001; Niyun Zhou; Li Liu 017; Jianhua Yao 001 (IROS, 2021)

Strongly Supervised Mitosis Detection In Breast Histopathology Images Using Weak Labels. - Zihan Wu 001; Rongbo Shen; Junzhou Huang; Liansheng Wang; Jianhua Yao 001 (ISBI, 2021)

From Pixel to Whole Slide: Automatic Detection of Microvascular Invasion in Hepatocellular Carcinoma on Histopathological Image via Cascaded Networks. - Hanbo Chen; Kang Wang; Yuyao Zhu; Jiangpeng Yan; Yan Ji 004; Jingjing Li; Dong Xie; Junzhou Huang; Shuqun Cheng; Jianhua Yao 001 (MICCAI (8), 2021)

Multi-modal Multi-instance Learning Using Weakly Correlated Histopathological Images and Tabular Clinical Information. - Hang Li; Fan Yang 081; Xiaohan Xing; Yu Zhao 009; Jun Zhang 018; Yueping Liu; Mengxue Han; Junzhou Huang; Liansheng Wang; Jianhua Yao 001 (MICCAI (8), 2021)

DT-MIL: Deformable Transformer for Multi-instance Learning on Histopathological Image. - Hang Li; Fan Yang 081; Yu Zhao 009; Xiaohan Xing; Jun Zhang 018; Mingxuan Gao; Junzhou Huang; Liansheng Wang; Jianhua Yao 001 (MICCAI (8), 2021)

3D Brain Midline Delineation for Hematoma Patients. - Chenchen Qin; Haoming Li 012; Yixun Liu; Hong Shang; Hanqi Pei; Xiaoning Wang; Yihao Chen; Jianbo Chang; Ming Feng; Renzhi Wang 002; Jianhua Yao 001 (MICCAI (5), 2021)

Intracerebral Haemorrhage Growth Prediction Based on Displacement Vector Field and Clinical Metadata. - Ting Xiao; Han Zheng; Xiaoning Wang; Xinghan Chen; Jianbo Chang; Jianhua Yao 001; Hong Shang; Peng Liu (MICCAI (5), 2021)

Hierarchical Attention Guided Framework for Multi-resolution Collaborative Whole Slide Image Segmentation. - Jiangpeng Yan; Hanbo Chen; Kang Wang; Yan Ji 004; Yuyao Zhu; Jingjing Li; Dong Xie; Zhe Xu 012; Junzhou Huang; Shuqun Cheng; Xiu Li 001; Jianhua Yao 001 (MICCAI (8), 2021)

Fusion of medical imaging and electronic health records with attention and multi-head machanisms. - Cheng Jiang 001; Yihao Chen; Jianbo Chang; Ming Feng; Renzhi Wang 002; Jianhua Yao 001 (CoRR, 2021)

Joint fully convolutional and graph convolutional networks for weakly-supervised segmentation of pathology images. - Jun Zhang 018; Zhiyuan Hua; Kezhou Yan; Kuan Tian; Jianhua Yao 001; Eryun Liu; Mingxia Liu 001; Xiao Han 011 (Medical Image Anal., 2021)

Integrating Prior Knowledge with Graph Encoder for Gene Regulatory Inference from Single-cell RNA-Seq Data. - Jiawei Li 018; Fan Yang 081; Fang Wang 028; Yu Rong 001; Peilin Zhao; Shizhan Chen; Jianhua Yao 001; Jijun Tang; Fei Guo 001 (BIBM, 2022)

Multimodal Dynamics: Dynamical Fusion for Trustworthy Multimodal Classification. - Zongbo Han; Fan Yang 081; Junzhou Huang; Changqing Zhang; Jianhua Yao 001 (CVPR, 2022)

ConCL: Concept Contrastive Learning for Dense Prediction Pre-training in Pathology Images. - Jiawei Yang 002; Hanbo Chen; Yuan Liang 001; Junzhou Huang; Lei He 001; Jianhua Yao 001 (ECCV (21), 2022)

Towards Better Understanding and Better Generalization of Low-shot Classification in Histology Images with Contrastive Learning. - Jiawei Yang 002; Hanbo Chen; Jiangpeng Yan; Xiaoyu Chen; Jianhua Yao 001 (ICLR, 2022)

Ideal Midsagittal Plane Detection Using Deep Hough Plane Network for Brain Surgical Planning. - Chenchen Qin; Wenxue Zhou; Jianbo Chang; Yihao Chen; Dasheng Wu; Yixun Liu; Ming Feng; Renzhi Wang 002; Wenming Yang; Jianhua Yao 001 (MICCAI (8), 2022)

ReMix: A General and Efficient Framework for Multiple Instance Learning Based Whole Slide Image Classification. - Jiawei Yang 002; Hanbo Chen; Yu Zhao 009; Fan Yang 081; Yao Zhang 010; Lei He 001; Jianhua Yao 001 (MICCAI (2), 2022)

SETMIL: Spatial Encoding Transformer-Based Multiple Instance Learning for Pathological Image Analysis. - Yu Zhao 009; Zhenyu Lin; Kai Sun; Yidan Zhang; Junzhou Huang; Liansheng Wang; Jianhua Yao 001 (MICCAI (2), 2022)

TreeMoCo: Contrastive Neuron Morphology Representation Learning. - Hanbo Chen; Jiawei Yang 002; Daniel Maxim Iascone; Lijuan Liu; Lei He 001; Hanchuan Peng; Jianhua Yao 001 (NeurIPS, 2022)

UMIX: Improving Importance Weighting for Subpopulation Shift via Uncertainty-Aware Mixup. - Zongbo Han; Zhipeng Liang; Fan Yang 081; Liu Liu 014; Lanqing Li; Yatao Bian; Peilin Zhao; Bingzhe Wu; Changqing Zhang; Jianhua Yao 001 (NeurIPS, 2022)

Clarion is a multi-label problem transformation method for identifying mRNA subcellular localizations. - Yue Bi; Fuyi Li; Xudong Guo; Zhikang Wang; Tong Pan; Yuming Guo 001; Geoffrey I. Webb; Jianhua Yao 001; Cangzhi Jia; Jiangning Song (Briefings Bioinform., 2022)

Multi-level attention graph neural network based on co-expression gene modules for disease diagnosis and prognosis. - Xiaohan Xing; Fan Yang 081; Hang Li; Jun Zhang 018; Yu Zhao 009; Mingxuan Gao; Junzhou Huang; Jianhua Yao 001 (Bioinform., 2022)

Deep contrastive learning based tissue clustering for annotation-free histopathology image analysis. - Jiangpeng Yan; Hanbo Chen; Xiu Li 001; Jianhua Yao 001 (Comput. Medical Imaging Graph., 2022)

Towards better understanding and better generalization of few-shot classification in histology images with contrastive learning. - Jiawei Yang 002; Hanbo Chen; Jiangpeng Yan; Xiaoyu Chen; Jianhua Yao 001 (CoRR, 2022)

Seeking Common Ground While Reserving Differences: Multiple Anatomy Collaborative Framework for Undersampled MRI Reconstruction. - Jiangpeng Yan; ChengHui Yu; Hanbo Chen; Zhe Xu 012; Junzhou Huang; Xiu Li 001; Jianhua Yao 001 (CoRR, 2022)

Multiplex-detection Based Multiple Instance Learning Network for Whole Slide Image Classification. - Zhikang Wang; Yue Bi; Tong Pan; Xiaoyu Wang 016; Chris Bain; Richard Bassed; Seiya Imoto; Jianhua Yao 001; Jiangning Song (CoRR, 2022)

Learning with Noisy Labels over Imbalanced Subpopulations. - Mingcai Chen; Yu Zhao 009; Bing He; Zongbo Han; Bingzhe Wu; Jianhua Yao 001 (CoRR, 2022)

Automatic Brain Midline Surface Delineation on 3D CT Images With Intracranial Hemorrhage. - Dasheng Wu; Haoming Li 012; Jianbo Chang; Chenchen Qin; Yihao Chen; Yixun Liu; Qinghua Zhang; Bingsheng Huang; Ming Feng; Renzhi Wang 002; Jianhua Yao 001 (IEEE Trans. Medical Imaging, 2022)

scBERT as a large-scale pretrained deep language model for cell type annotation of single-cell RNA-seq data. - Fan Yang 081; Wenchuan Wang; Fang Wang 028; Yuan Fang; Duyu Tang; Junzhou Huang; Hui Lu 004; Jianhua Yao 001 (Nat. Mac. Intell., 2022)

Multimodal-AIR-BERT: A Multimodal Pre-trained Model for Antigen Specificity Prediction in Adaptive Immune Receptors. - Yang Xiao; Yueshan Huang; Yu Zhao 009; Fan Xu; Qin Ren 001; Bing He; Jianhua Yao 001; Xiao Liu (BIBM, 2023)

A Noisy-Label-Learning Formulation for Immune Repertoire Classification and Disease-Associated Immune Receptor Sequence Identification. - Mingcai Chen; Yu Zhao 009; Zhonghuang Wang; Bing He; Jianhua Yao 001 (IJCAI, 2023)

Human-Machine Interactive Tissue Prototype Learning for Label-Efficient Histopathology Image Segmentation. - Wentao Pan 001; Jiangpeng Yan; Hanbo Chen; Jiawei Yang 002; Zhe Xu 012; Xiu Li 001; Jianhua Yao 001 (IPMI, 2023)

An Unsupervised Multispectral Image Registration Network for Skin Diseases. - Songhui Diao; Wenxue Zhou; Chenchen Qin; Jun Liao; Junzhou Huang; Wenming Yang; Jianhua Yao 001 (MICCAI (10), 2023)

IIB-MIL: Integrated Instance-Level and Bag-Level Multiple Instances Learning with Label Disambiguation for Pathological Image Analysis. - Qin Ren 001; Yu Zhao 009; Bing He; Bingzhe Wu; Sijie Mai; Fan Xu; Yueshan Huang; Yonghong He; Junzhou Huang; Jianhua Yao 001 (MICCAI (6), 2023)

Reweighted Mixup for Subpopulation Shift. - Zongbo Han; Zhipeng Liang; Fan Yang 081; Liu Liu 014; Lanqing Li; Yatao Bian; Peilin Zhao; Qinghua Hu; Bingzhe Wu; Changqing Zhang; Jianhua Yao 001 (CoRR, 2023)

DNAGPT: A Generalized Pretrained Tool for Multiple DNA Sequence Analysis Tasks. - Daoan Zhang; Weitong Zhang; Bing He; Jianguo Zhang 001; Chenchen Qin; Jianhua Yao 001 (CoRR, 2023)

Semi-supervised Semantic Segmentation Meets Masked Modeling: Fine-grained Locality Learning Matters in Consistency Regularization. - Wentao Pan 001; Zhe Xu 012; Jiangpeng Yan; Zihan Wu 001; Raymond Kai-Yu Tong; Xiu Li 001; Jianhua Yao 001 (CoRR, 2023)

Interpretable artificial intelligence model for accurate identification of medical conditions using immune repertoire. - Yu Zhao 009; Bing He; Zhimeng Xu; Yidan Zhang; Xuan Zhao; Zhi-An Huang; Fan Yang 081; Liang Wang 015; Lei Duan; Jiangning Song; Jianhua Yao 001 (Briefings Bioinform., 2023)

Targeting tumor heterogeneity: multiplex-detection-based multiple instance learning for whole slide image classification. - Zhikang Wang; Yue Bi; Tong Pan; Xiaoyu Wang 016; Chris Bain; Richard Bassed; Seiya Imoto; Jianhua Yao 001; Roger J. Daly; Jiangning Song (Bioinform., 2023)

3D Shuffle-Mixer: An Efficient Context-Aware Vision Learner of Transformer-MLP Paradigm for Dense Prediction in Medical Volume. - Jianye Pang; Cheng Jiang 001; Yihao Chen; Jianbo Chang; Ming Feng; Renzhi Wang 002; Jianhua Yao 001 (IEEE Trans. Medical Imaging, 2023)

iAMPCN: a deep-learning approach for identifying antimicrobial peptides and their functional activities. - Jing Xu 008; Fuyi Li; Chen Li 021; Xudong Guo; Cornelia B. Landersdorfer; Hsin-Hui Shen; Anton Y. Peleg; Jian Li 052; Seiya Imoto; Jianhua Yao 001; Tatsuya Akutsu; Jiangning Song (Briefings Bioinform., 2023)

SC-AIR-BERT: a pre-trained single-cell model for predicting the antigen-binding specificity of the adaptive immune receptor. - Yu Zhao 009; Xiaona Su; Weitong Zhang; Sijie Mai; Zhimeng Xu; Chenchen Qin; Rongshan Yu; Bing He; Jianhua Yao 001 (Briefings Bioinform., 2023)

scMHNN: a novel hypergraph neural network for integrative analysis of single-cell epigenomic, transcriptomic and proteomic data. - Wei Li 184; Bin Xiang; Fan Yang 081; Yu Rong 001; Yanbin Yin; Jianhua Yao 001; Han Zhang 017 (Briefings Bioinform., 2023)

Standardized measurement of mid-surface shift of brain based on deep Hough transform. - Wenxue Zhou; Chenchen Qin; Jianbo Chang; Yixun Liu; Yihao Chen; Ming Feng; Renzhi Wang 002; Wenming Yang; Jianhua Yao 001 (Comput. Medical Imaging Graph., 2023)

Deep domain adversarial neural network for the deconvolution of cell type mixtures in tissue proteome profiling. - Fang Wang 028; Fan Yang 081; Longkai Huang; Wei Li 184; Jiangning Song; Robin B. Gasser; Ruedi Aebersold; Guohua Wang 001; Jianhua Yao 001 (Nat. Mac. Intell., 2023)

Surformer: An interpretable pattern-perceptive survival transformer for cancer survival prediction from histopathology whole slide images. - Zhikang Wang; Qian Gao; Xiaoping Yi; Xinyu Zhang 017; Yiwen Zhang; Daokun Zhang; Pietro Liò; Chris Bain; Richard Bassed; Shanshan Li; Yuming Guo 001; Seiya Imoto; et al. (Comput. Methods Programs Biomed., 2023)

A Label Disambiguation-Based Multimodal Massive Multiple Instance Learning Approach for Immune Repertoire Classification. - Fan Xu; Yu Zhao 009; Bingzhe Wu; Yueshan Huang; Qin Ren 001; Yang Xiao; Bing He; Jie Zheng; Jianhua Yao 001 (AAAI, 2024)

Knowledge-aware Reinforced Language Models for Protein Directed Evolution. - Yuhao Wang; Qiang Zhang 026; Ming Qin; Xiang Zhuang; Xiaotong Li; Zhichen Gong; Zeyuan Wang; Yu Zhao 009; Jianhua Yao 001; Keyan Ding; Huajun Chen (ICML, 2024)

StableMask: Refining Causal Masking in Decoder-only Transformer. - Qingyu Yin; Xuzheng He; Xiang Zhuang; Yu Zhao 009; Jianhua Yao 001; Xiaoyu Shen; Qiang Zhang 026 (ICML, 2024)

Relaxing Continuous Constraints of Equivariant Graph Neural Networks for Broad Physical Dynamics Learning. - Zinan Zheng; Yang Liu 245; Jia Li 009; Jianhua Yao 001; Yu Rong 001 (KDD, 2024)

DePLM: Denoising Protein Language Models for Property Optimization. - Zeyuan Wang; Keyan Ding; Ming Qin; Xiaotong Li; Xiang Zhuang; Yu Zhao 009; Jianhua Yao 001; Qiang Zhang 026; Huajun Chen (NeurIPS, 2024)

Graph domain adaptation-based framework for gene expression enhancement and cell type identification in large-scale spatially resolved transcriptomics. - Rongbo Shen; Meiling Cheng; Wencang Wang; Qi Fan; Huan Yan; Jiayue Wen; Zhiyuan Yuan; Jianhua Yao 001; Yixue Li; Jiao Yuan (Briefings Bioinform., 2024)

Functional Protein Design with Local Domain Alignment. - Chaohao Yuan; Songyou Li; Geyan Ye; Yikun Zhang; Long-Kai Huang; Wenbing Huang 001; Wei Liu 005; Jianhua Yao 001; Yu Rong 001 (CoRR, 2024)

Atomas: Hierarchical Alignment on Molecule-Text for Unified Molecule Understanding and Generation. - Yikun Zhang; Geyan Ye; Chaohao Yuan; Bo Han 003; Long-Kai Huang; Jianhua Yao 001; Wei Liu 005; Yu Rong 001 (CoRR, 2024)

SciKnowEval: Evaluating Multi-level Scientific Knowledge of Large Language Models. - Kehua Feng; Keyan Ding; Weijie Wang; Xiang Zhuang; Zeyuan Wang; Ming Qin; Yu Zhao 009; Jianhua Yao 001; Qiang Zhang 026; Huajun Chen (CoRR, 2024)

Relaxing Continuous Constraints of Equivariant Graph Neural Networks for Physical Dynamics Learning. - Zinan Zheng; Yang Liu 165; Jia Li 009; Jianhua Yao 001; Yu Rong 001 (CoRR, 2024)

Meta-Learn Unimodal Signals with Weak Supervision for Multimodal Sentiment Analysis. - Sijie Mai; Yu Zhao 009; Ying Zeng; Jianhua Yao 001; Haifeng Hu 001 (CoRR, 2024)

Reply to: Deeper evaluation of a single-cell foundation model. - Fan Yang 081; Fang Wang 028; Longkai Huang; Linjing Liu; Junzhou Huang; Jianhua Yao 001 (Nat. Mac. Intell., 2024)

Current opinions on large cellular models. - Minsheng Hao; Lei Wei; Fan Yang 081; Jianhua Yao 001; Christina V. Theodoris; Bo Wang 044; Xin Li; Ge Yang 002; Xuegong Zhang (Quant. Biol., 2024)

Deep Spatio-Temporal Network for Low-SNR Cryo-EM Movie Frame Enhancement. - Xiaoya Chong; Howard Leung; Qing Li 001; Jianhua Yao 001; Niyun Zhou (IEEE ACM Trans. Comput. Biol. Bioinform., 2024)

IgGM: A Generative Model for Functional Antibody and Nanobody Design. - Rubo Wang; Fandi Wu; Xingyu Gao 001; Jiaxiang Wu 001; Peilin Zhao; Jianhua Yao 001 (ICLR, 2025)

Atomas: Hierarchical Adaptive Alignment on Molecule-Text for Unified Molecule Understanding and Generation. - Yikun Zhang; Geyan Ye; Chaohao Yuan; Bo Han 003; Long-Kai Huang; Jianhua Yao 001; Wei Liu 005; Yu Rong 001 (ICLR, 2025)

Annotation-guided Protein Design with Multi-Level Domain Alignment. - Chaohao Yuan; Songyou Li; Geyan Ye; Yikun Zhang; Long-Kai Huang; Wenbing Huang 001; Wei Liu 005; Jianhua Yao 001; Yu Rong 001 (KDD (1), 2025)

Evaluation of T Cell Receptor Construction Methods from scRNA-Seq Data. - Ruonan Tian; Zhejian Yu; Ziwei Xue; Jiaxin Wu; Lize Wu; Shuo Cai; Bing Gao; Bing He; Yu Zhao 009; Jianhua Yao 001; Linrong Lu; Wanlu Liu (Genom. Proteom. Bioinform., 2025)

Strategic priorities for transformative progress in advancing biology with proteomics and artificial intelligence. - Yingying Sun; Jun A; Zhiwei Liu; Rui Sun; Liujia Qian; Samuel H. Payne; Wout Bittremieux; Markus Ralser; Chen Li 021; Yi Chen; Zhen Dong; Yasset Pérez-Riverol; et al. (CoRR, 2025)

Learning With Noisy Labels Over Imbalanced Subpopulations. - Mingcai Chen; Yu Zhao 009; Bing He; Zongbo Han; Junzhou Huang; Bingzhe Wu; Jianhua Yao 001 (IEEE Trans. Neural Networks Learn. Syst., 2025)

Steering Protein Language Models. - Long-Kai Huang; Rongyi Zhu; Bing He; Jianhua Yao 001 (CoRR, 2025)