Learning protein-DNA interaction landscapes by integrating experimental data through computational models. - Jianling Zhong; Todd Wasson; Alexander J. Hartemink (Bioinform., 2014)

Learning a Hybrid Architecture for Sequence Regression and Annotation. - Yizhe Zhang 002; Ricardo Henao; Lawrence Carin; Jianling Zhong; Alexander J. Hartemink (AAAI, 2016)

RoboCOP: Multivariate State Space Model Integrating Epigenomic Accessibility Data to Elucidate Genome-Wide Chromatin Occupancy. - Sneha Mitra; Jianling Zhong; David M. MacAlpine; Alexander J. Hartemink (RECOMB, 2020)

Personalized Query Suggestions. - Jianling Zhong; Weiwei Guo; Huiji Gao; Bo Long (SIGIR, 2020)